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Sample GSM1554366 Query DataSets for GSM1554366
Status Public on Dec 01, 2015
Title HL-23 OSA
Sample type RNA
Source name Osteosarcoma
Organism Mus musculus
Characteristics tissue: Osteosarcoma
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
VALUE quantile normalized
HL-23 OSA.Detection Pval

Data table
ID_REF VALUE HL-23 OSA.Detection Pval
ILMN_2417611 92.22395 0.8589743
ILMN_2762289 107.6914 0.3557692
ILMN_2896528 1915.632 0
ILMN_2721178 475.6491 0
ILMN_2458837 96.11372 0.741453
ILMN_3033922 941.8491 0
ILMN_3092673 5785.037 0
ILMN_1230777 1861.302 0
ILMN_1246069 671.229 0
ILMN_1232042 105.1756 0.4391026
ILMN_1243193 861.865 0
ILMN_2524361 104.1813 0.4754274
ILMN_1242440 105.2464 0.4348291
ILMN_1233188 931.6263 0
ILMN_2543688 3918.585 0
ILMN_1259789 120.1512 0.1121795
ILMN_2816356 99.73352 0.625
ILMN_1224596 137.7972 0.01816239
ILMN_1233643 109.5442 0.3066239
ILMN_2808939 475.5554 0

Total number of rows: 45281

Table truncated, full table size 1320 Kbytes.

Supplementary file Size Download File type/resource
GSM1554366_9341927094_D_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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