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Sample GSM1554368 Query DataSets for GSM1554368
Status Public on Dec 01, 2015
Title HL-60 OSA
Sample type RNA
 
Source name Osteosarcoma
Organism Mus musculus
Characteristics tissue: Osteosarcoma
genotype/variation: p53 flow/flox
Treatment protocol No treatment was used
Growth protocol Transgenic mice bearing p53 mutation were monitored until tumors were readily observable and/or limb paralysis symptoms appeared
Extracted molecule total RNA
Extraction protocol RNA was extracted using standard Trizol method
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description fresh frozen
Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Nov 25, 2014
Last update date Dec 01, 2015
Contact name Yuning Jackie Tang
Organization name Hospital for Sick Children
Department Program in Developmental Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Platform ID GPL6887
Series (1)
GSE63631 Transcriptome analysis of a novel mouse model of osteosarcoma and soft tissue sarcoma

Data table header descriptions
ID_REF
VALUE quantile normalized
HL-60 OSA.Detection Pval

Data table
ID_REF VALUE HL-60 OSA.Detection Pval
ILMN_2417611 100.4275 0.4935897
ILMN_2762289 104.5689 0.357906
ILMN_2896528 2083.568 0
ILMN_2721178 591.1264 0
ILMN_2458837 100.6831 0.4871795
ILMN_3033922 644.3533 0
ILMN_3092673 3195.719 0
ILMN_1230777 1190.28 0
ILMN_1246069 362.6852 0
ILMN_1232042 98.10826 0.5833333
ILMN_1243193 893.52 0
ILMN_2524361 106.1993 0.3119658
ILMN_1242440 125.0932 0.04594017
ILMN_1233188 841.5428 0
ILMN_2543688 3775.97 0
ILMN_1259789 108.2635 0.2649573
ILMN_2816356 98.31925 0.5705128
ILMN_1224596 104.6088 0.3557692
ILMN_1233643 112.5742 0.1752137
ILMN_2808939 513.1683 0

Total number of rows: 45281

Table truncated, full table size 1330 Kbytes.




Supplementary file Size Download File type/resource
GSM1554368_9341927094_E_Grn.idat.gz 2.1 Mb (ftp)(http) IDAT
Raw data are available on Series record
Processed data included within Sample table
Raw data provided as supplementary file

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