NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1558749 Query DataSets for GSM1558749
Status Public on Aug 28, 2015
Title 75 hpf control/dmso sample 4A
Sample type RNA
 
Source name 75 hpf eyes
Organism Danio rerio
Characteristics FISH: 4
developmental stage: 75 hpf
tissue: embryonic eye
agent: control
Growth protocol 28.5 deg C
Extracted molecule total RNA
Extraction protocol total RNA qiagen from dissected eye tissues
Label Cy3
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing Algorithm: ExpressionStat 5.0
 
Submission date Dec 04, 2014
Last update date Aug 29, 2015
Contact name Deborah Lynn Stenkamp
E-mail(s) dstenkam@uidaho.edu
Phone 208-885-8963
Organization name University of Idaho
Department Biological Sciences
Street address 875 Perimeter Drive, MS 3051
City Moscow
State/province Idaho
ZIP/Postal code 83844-3051
Country USA
 
Platform ID GPL1319
Series (1)
GSE63873 Retinoic acid signaling targets within the embryonic zebrafish eye during photoreceptor differentiation

Data table header descriptions
ID_REF
VALUE MAS5 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 158.849 P 4.42873e-05
AFFX-BioB-M_at 281.753 P 4.42873e-05
AFFX-BioB-3_at 265.543 P 4.42873e-05
AFFX-BioC-5_at 445.425 P 4.42873e-05
AFFX-BioC-3_at 306.364 P 4.42873e-05
AFFX-BioDn-5_at 615.186 P 4.42873e-05
AFFX-BioDn-3_at 1224.83 P 4.42873e-05
AFFX-CreX-5_at 2426.36 P 4.42873e-05
AFFX-CreX-3_at 3245.14 P 4.42873e-05
AFFX-DapX-5_at 2.56717 A 0.368438
AFFX-DapX-M_at 0.345661 A 0.971543
AFFX-DapX-3_at 0.959842 A 0.58862
AFFX-LysX-5_at 1.10009 A 0.60308
AFFX-LysX-M_at 0.395631 A 0.868639
AFFX-LysX-3_at 1.27212 A 0.48511
AFFX-PheX-5_at 0.455257 A 0.834139
AFFX-PheX-M_at 2.18933 A 0.382599
AFFX-PheX-3_at 1.94326 A 0.41138
AFFX-ThrX-5_at 0.304192 A 0.957038
AFFX-ThrX-M_at 0.589607 A 0.860538

Total number of rows: 15617

Table truncated, full table size 579 Kbytes.




Supplementary file Size Download File type/resource
GSM1558749_Craig-Set-4A-022908.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM1558749_Craig-Set-4A-022908.CHP.gz 84.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap