GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1558750
Query DataSets for GSM1558750
Status
Public on Aug 28, 2015
Title
75 hpf RA sample 1B
Sample type
RNA
Source name
75 hpf eyes RA
Organism
Danio rerio
Characteristics
FISH: 1
developmental stage: 75 hpf
tissue: embryonic eye
agent: RA
Growth protocol
28.5 deg C
Extracted molecule
total RNA
Extraction protocol
total RNA qiagen from dissected eye tissues
Label
Cy3
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Data processing
Algorithm: ExpressionStat 5.0
Submission date
Dec 04, 2014
Last update date
Aug 29, 2015
Contact name
Deborah Lynn Stenkamp
E-mail(s)
dstenkam@uidaho.edu
Phone
208-885-8963
Organization name
University of Idaho
Department
Biological Sciences
Street address
875 Perimeter Drive, MS 3051
City
Moscow
State/province
Idaho
ZIP/Postal code
83844-3051
Country
USA
Platform ID
GPL1319
Series (1)
GSE63873
Retinoic acid signaling targets within the embryonic zebrafish eye during photoreceptor differentiation
Data table header descriptions
ID_REF
VALUE
MAS5 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
156.758
P
4.42873e-05
AFFX-BioB-M_at
280.133
P
4.42873e-05
AFFX-BioB-3_at
249.735
P
5.16732e-05
AFFX-BioC-5_at
476.034
P
4.42873e-05
AFFX-BioC-3_at
286.738
P
4.42873e-05
AFFX-BioDn-5_at
637.933
P
4.42873e-05
AFFX-BioDn-3_at
1317.42
P
4.42873e-05
AFFX-CreX-5_at
2482.72
P
4.42873e-05
AFFX-CreX-3_at
3469.3
P
4.42873e-05
AFFX-DapX-5_at
3.31613
A
0.250796
AFFX-DapX-M_at
0.352236
A
0.979978
AFFX-DapX-3_at
2.22846
A
0.368438
AFFX-LysX-5_at
1.69178
A
0.699394
AFFX-LysX-M_at
0.928913
A
0.783476
AFFX-LysX-3_at
1.21691
A
0.60308
AFFX-PheX-5_at
0.37218
A
0.891041
AFFX-PheX-M_at
1.0814
A
0.645547
AFFX-PheX-3_at
0.682386
A
0.686277
AFFX-ThrX-5_at
0.287512
A
0.843268
AFFX-ThrX-M_at
0.507621
A
0.712257
Total number of rows:
15617
Table truncated, full table size
579 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1558750_Craig-Set-1B-022908.CEL.gz
2.2 Mb
(ftp)
(http)
CEL
GSM1558750_Craig-Set-1B-022908.CHP.gz
84.8 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
