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Status
Public on Jan 20, 2007
Title
NRMRL test replicate04, EPA72 batch052005 430_2 chip
Sample type
RNA
Source name
Neonatal mouse small intestinal tissue, 24 hour infection
Organism
Mus musculus Characteristics
Swiss Webster neonatal mouse, 4-6 days old
Extracted molecule
total RNA
Extraction protocol
TriZol procedure
Label
Strepavidin Phycoerythrin (SAPE)
Label protocol
Affymetrix SOP, EukGE-WS2
Hybridization protocol
GCOS software, EukGE-WS2
Scan protocol
GCOS software with 3000 Scanner
Description
None
Data processing
GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065, Tau 0.015; Gamma1L and 1H 0.0045; Gamma2L and 2H 0.06; and Pertubation 1.1.
Submission date
Jan 17, 2007
Last update date
Aug 28, 2018
Contact name
Samuel Hayes
E-mail(s)
hayes.sam@epa.gov Phone
513-569-7514
Organization name
United States Environmental Protection Agency
Department
MS-387
Lab
NRMRL/WSWRD
Street address
26 W. Martin Luther King Dr.
City
Cincinnati
State/province
OH
ZIP/Postal code
45268
Country
USA
Platform ID
GPL1261 Series (1)
GSE6765 Aeromonas caviae infection, 24 hours
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF EPA05020_60871_M430-2_EPA0907N_Stat Pairs Total probe sets
EPA05020_60871_M430-2_EPA0907N_Stat Pairs Used Probe sets used
VALUE Normalized intensity value
ABS_CALL present versus absent call
DETECTION P-VALUE Detection p-value
Data table ID_REF EPA05020_60871_M430-2_EPA0907N_Stat Pairs EPA05020_60871_M430-2_EPA0907N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
20
20
256.4
P
0.003212
AFFX-BioB-M_at
20
20
323.3
P
0.000857
AFFX-BioB-3_at
20
20
179.3
P
0.003212
AFFX-BioC-5_at
20
20
662.2
P
0.000060
AFFX-BioC-3_at
20
20
922.6
P
0.000070
AFFX-BioDn-5_at
20
20
938.1
P
0.000044
AFFX-BioDn-3_at
20
20
3490.8
P
0.000297
AFFX-CreX-5_at
20
20
9879.6
P
0.000052
AFFX-CreX-3_at
20
20
12284.9
P
0.000044
AFFX-DapX-5_at
20
20
26.6
A
0.239063
AFFX-DapX-M_at
20
20
19.3
A
0.500000
AFFX-DapX-3_at
20
20
49.0
A
0.514890
AFFX-LysX-5_at
20
20
13.4
A
0.659352
AFFX-LysX-M_at
20
20
5.5
A
0.883887
AFFX-LysX-3_at
20
20
28.7
A
0.216524
AFFX-PheX-5_at
20
20
2.1
A
0.971543
AFFX-PheX-M_at
20
20
5.1
A
0.834139
AFFX-PheX-3_at
20
20
47.6
A
0.354453
AFFX-ThrX-5_at
20
20
7.8
A
0.760937
AFFX-ThrX-M_at
20
20
17.6
A
0.529762
45101 1500 Kbytes .Supplementary file Size Download File type/resource GSM155994.CEL.gz
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