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Sample GSM1562947 Query DataSets for GSM1562947
Status Public on Jan 27, 2016
Title Mm_soft-tissue_Smarcb1def-T-Cell_Lymphoma (MM12_ARN0005)
Sample type RNA
 
Source name Smarcb1-deficient T-Cell lymphoma mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_T-cell_lymphoma
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.251096399
100009600_at 2.22334026
100012_at 2.531603812
100017_at 2.550739389
100019_at 8.699712843
100034251_at 10.97781708
100034739_at 2.152776956
100034748_at 2.980768556
100036520_at 2.882850757
100036521_at 10.07643547
100036523_at 2.782548466
100036768_at 2.571036777
100037258_at 7.665639946
100037262_at 1.807742813
100037278_at 6.326612139
100038347_at 2.962593026
100038358_at 2.09766974
100038371_at 3.052212148
100038392_at 2.034231999
100038398_at 2.282777771

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562947_MM12_ARN0005_s1h1_Moe430p2.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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