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Sample GSM1562949 Query DataSets for GSM1562949
Status Public on Jan 27, 2016
Title Mm_soft-tissue_Smarcb1def-T-Cell_Lymphoma (MM12_ARN0007)
Sample type RNA
 
Source name Smarcb1-deficient T-Cell lymphoma mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_T-cell_lymphoma
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.238229486
100009600_at 2.214224443
100012_at 2.51636302
100017_at 3.814101419
100019_at 8.551093591
100034251_at 12.64582139
100034739_at 2.141615865
100034748_at 3.009823094
100036520_at 2.856498954
100036521_at 9.342803476
100036523_at 2.831186634
100036768_at 2.550250071
100037258_at 6.82529297
100037262_at 1.79920939
100037278_at 2.638595398
100038347_at 3.261409113
100038358_at 2.085432343
100038371_at 3.061595229
100038392_at 2.220399349
100038398_at 2.273083091

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562949_MM12_ARN0007_s1h1_Moe430p2.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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