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Sample GSM1562955 Query DataSets for GSM1562955
Status Public on Jan 27, 2016
Title Mm_soft-tissue_Smarcb1def-T-Cell_Lymphoma (MM18_ARN0006)
Sample type RNA
 
Source name Smarcb1-deficient T-Cell lymphoma mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_T-cell_lymphoma
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.252800198
100009600_at 2.22529572
100012_at 2.537709346
100017_at 2.129453806
100019_at 9.100056602
100034251_at 10.20874858
100034739_at 2.153929117
100034748_at 3.030931482
100036520_at 2.875969099
100036521_at 9.47330531
100036523_at 2.783692311
100036768_at 2.578093151
100037258_at 7.804041567
100037262_at 1.809560318
100037278_at 3.329129409
100038347_at 2.874320507
100038358_at 2.100427333
100038371_at 3.082791098
100038392_at 2.036176607
100038398_at 2.284852739

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562955_MM18_ARN0006_s1h1_Moe430p2.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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