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Sample GSM1562956 Query DataSets for GSM1562956
Status Public on Jan 27, 2016
Title Mm_soft-tissue_Smarcb1def-T-Cell_Lymphoma (MM18_ARN0010)
Sample type RNA
 
Source name Smarcb1-deficient T-Cell lymphoma mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_T-cell_lymphoma
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.284415871
100009600_at 2.25971591
100012_at 2.576486189
100017_at 2.414731903
100019_at 8.608877758
100034251_at 10.88680108
100034739_at 2.168684177
100034748_at 3.065498238
100036520_at 3.20306383
100036521_at 11.14026916
100036523_at 2.824655631
100036768_at 2.60102388
100037258_at 8.689633894
100037262_at 1.823255996
100037278_at 3.339378195
100038347_at 3.256761636
100038358_at 2.114099594
100038371_at 3.080593882
100038392_at 2.05235954
100038398_at 2.309485663

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562956_MM18_ARN0010_s1h1_Moe430p2.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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