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Sample GSM1562957 Query DataSets for GSM1562957
Status Public on Jan 27, 2016
Title Mm_soft-tissue_Smarcb1def-T-Cell_Lymphoma (MM18_ARN0011)
Sample type RNA
 
Source name Smarcb1-deficient T-Cell lymphoma mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_T-cell_lymphoma
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.247654235
100009600_at 2.219866177
100012_at 2.509464289
100017_at 2.624234715
100019_at 8.802336072
100034251_at 10.24998303
100034739_at 2.153062722
100034748_at 3.036018641
100036520_at 2.836230914
100036521_at 9.970885869
100036523_at 2.766198521
100036768_at 2.558009098
100037258_at 8.212772773
100037262_at 1.809568279
100037278_at 2.616874079
100038347_at 4.256451968
100038358_at 2.095441365
100038371_at 3.028150231
100038392_at 2.034335567
100038398_at 7.485006669

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562957_MM18_ARN0011_s1h1_Moe430p2.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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