NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1562958 Query DataSets for GSM1562958
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0001)
Sample type RNA
 
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.156449103
100009600_at 2.168109342
100012_at 2.412607059
100017_at 2.023270199
100019_at 8.159550891
100034251_at 6.760194787
100034739_at 2.099295458
100034748_at 2.690381046
100036520_at 2.639592158
100036521_at 9.589251552
100036523_at 2.654743357
100036768_at 2.478905951
100037258_at 7.325173053
100037262_at 1.782232221
100037278_at 2.602243315
100038347_at 2.24040701
100038358_at 2.04175043
100038371_at 2.928185733
100038392_at 1.993668573
100038398_at 2.200594965

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562958_MM31_ARN0001_s1h1_MOE430p2.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap