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Sample GSM1562960 Query DataSets for GSM1562960
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0012)
Sample type RNA
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.141066936
100009600_at 2.171415561
100012_at 2.398515966
100017_at 2.041683338
100019_at 7.785800685
100034251_at 8.799811543
100034739_at 2.090659673
100034748_at 2.669031576
100036520_at 2.59718124
100036521_at 8.487380641
100036523_at 2.564925999
100036768_at 2.433560658
100037258_at 7.99116279
100037262_at 1.774402047
100037278_at 2.577708626
100038347_at 2.206289263
100038358_at 2.034524633
100038371_at 2.96374781
100038392_at 1.995069933
100038398_at 2.190039565

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562960_MM31_ARN0012_s1h1_Moe430p2.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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