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Sample GSM1562961 Query DataSets for GSM1562961
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0013)
Sample type RNA
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.151612878
100009600_at 2.154383341
100012_at 2.411651685
100017_at 2.053692503
100019_at 7.984172498
100034251_at 4.217652716
100034739_at 2.101874496
100034748_at 2.676114417
100036520_at 2.630034741
100036521_at 9.651579447
100036523_at 2.513367832
100036768_at 2.44666224
100037258_at 7.918791638
100037262_at 1.78453143
100037278_at 2.588137109
100038347_at 2.483745546
100038358_at 2.045164314
100038371_at 2.927193856
100038392_at 1.996422581
100038398_at 2.202803701

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562961_MM31_ARN0013_s1h1_Moe430p2.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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