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Sample GSM1562962 Query DataSets for GSM1562962
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0004)
Sample type RNA
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.275021745
100009600_at 2.211270418
100012_at 2.505274468
100017_at 2.99796385
100019_at 8.160844007
100034251_at 8.522153721
100034739_at 2.142407937
100034748_at 2.995549427
100036520_at 2.840712012
100036521_at 8.911857556
100036523_at 2.758476908
100036768_at 2.540677337
100037258_at 7.985491409
100037262_at 1.799299636
100037278_at 2.618745434
100038347_at 2.632676452
100038358_at 2.08484995
100038371_at 2.998822292
100038392_at 2.023635366
100038398_at 4.927879666

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562962_MM31_ARN0004_s1h1_MOE430p2.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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