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Sample GSM1562964 Query DataSets for GSM1562964
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0006)
Sample type RNA
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.196433831
100009600_at 2.182999654
100012_at 2.468144864
100017_at 3.072101423
100019_at 8.400505695
100034251_at 11.14360595
100034739_at 2.125308243
100034748_at 2.961937012
100036520_at 2.759980629
100036521_at 6.906087325
100036523_at 2.739611802
100036768_at 2.498613693
100037258_at 7.894991887
100037262_at 1.788081557
100037278_at 2.600834717
100038347_at 2.894066075
100038358_at 2.062141301
100038371_at 3.179993591
100038392_at 2.007972525
100038398_at 2.243411497

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562964_MM31_ARN0006_s1h1_MOE430p2.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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