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Sample GSM1562965 Query DataSets for GSM1562965
Status Public on Jan 27, 2016
Title Mm_CNS_Smarcb1def-Tumor (MM31_ARN0017)
Sample type RNA
Source name Smarcb1-deficient Brain tumor mouse tumor
Organism Mus musculus
Characteristics tissue: Smarcb1-def_brain_tumor
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.212666215
100009600_at 2.206351277
100012_at 2.485943632
100017_at 5.216565475
100019_at 8.519141039
100034251_at 12.2679567
100034739_at 2.138214409
100034748_at 2.977480798
100036520_at 2.783079367
100036521_at 9.099422526
100036523_at 2.72847638
100036768_at 2.647993751
100037258_at 8.35024011
100037262_at 1.788161489
100037278_at 3.225160243
100038347_at 2.460007358
100038358_at 2.079932763
100038371_at 2.938512161
100038392_at 2.01916452
100038398_at 2.256058407

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562965_MM31_ARN0017_s1h1_Moe430p2.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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