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Sample GSM1562966 Query DataSets for GSM1562966
Status Public on Jan 27, 2016
Title Mm_CNS_MB-SHH (MM12_ARN0013)
Sample type RNA
Source name Medulloblastoma Shh mouse tumor
Organism Mus musculus
Characteristics tissue: Mb_Shh
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.241305245
100009600_at 2.193290714
100012_at 2.523318729
100017_at 2.065342043
100019_at 8.416805511
100034251_at 7.301539008
100034739_at 2.148622568
100034748_at 3.020094315
100036520_at 2.852621628
100036521_at 10.44758818
100036523_at 2.761420528
100036768_at 2.555119437
100037258_at 7.341627435
100037262_at 1.805785298
100037278_at 2.616643718
100038347_at 2.641484732
100038358_at 2.095303455
100038371_at 3.036554933
100038392_at 2.032890733
100038398_at 2.281916549

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562966_MM12_ARN0013_s1h1_Moe430p2.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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