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Sample GSM1562967 Query DataSets for GSM1562967
Status Public on Jan 27, 2016
Title Mm_CNS_MB-SHH (MM12_ARN0014)
Sample type RNA
 
Source name Medulloblastoma Shh mouse tumor
Organism Mus musculus
Characteristics tissue: Mb_Shh
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
 
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
 
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
E-mail(s) wilfrid.richer@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
100008567_at 2.248560791
100009600_at 2.23239714
100012_at 2.553064318
100017_at 2.075934632
100019_at 8.563439084
100034251_at 6.567181881
100034739_at 2.159697169
100034748_at 3.055612855
100036520_at 2.927021315
100036521_at 10.42862008
100036523_at 2.810441968
100036768_at 2.584963464
100037258_at 7.321069863
100037262_at 1.812076023
100037278_at 2.620738303
100038347_at 2.650417122
100038358_at 2.111462356
100038371_at 3.069633286
100038392_at 2.0428958
100038398_at 2.29866951

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.




Supplementary file Size Download File type/resource
GSM1562967_MM12_ARN0014_s1h1_Moe430p2.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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