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Sample GSM1562968 Query DataSets for GSM1562968
Status Public on Jan 27, 2016
Title Mm_CNS_MB-SHH (MM18_ARN0008)
Sample type RNA
Source name Medulloblastoma Shh mouse tumor
Organism Mus musculus
Characteristics tissue: Mb_Shh
Extracted molecule total RNA
Extraction protocol Total RNAs were collected from samples using the miRNeasy kit (Qiagen) according to the manufacturer's instructions
Label biotin
Label protocol According to the standard Affymetrix protocol
Hybridization protocol Hybridization performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Scan protocol Scanning were performed by Institut Curie Affymetrix Microarray Core Facility according to the manufacturer's instructions
Data processing Arrays were normalized by the GCRMA procedure using Brainarray annotations (V.16.0.0, ENTREZG)
Submission date Dec 09, 2014
Last update date Jan 28, 2016
Contact name Wilfrid Richer
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
Platform ID GPL16368
Series (1)
GSE64019 Mouse Smarcb1-deficient models recapitulate subtypes of human rhabdoid tumors.

Data table header descriptions
VALUE log2 GC-RMA signal

Data table
100008567_at 2.244974234
100009600_at 2.246498197
100012_at 2.555943107
100017_at 2.071213484
100019_at 8.39078775
100034251_at 5.135496687
100034739_at 2.155611677
100034748_at 3.068113541
100036520_at 2.940852275
100036521_at 9.334594182
100036523_at 2.814360427
100036768_at 2.591366834
100037258_at 7.315356919
100037262_at 1.819314344
100037278_at 2.616328854
100038347_at 2.918919475
100038358_at 2.100423907
100038371_at 3.190352788
100038392_at 2.038014593
100038398_at 2.296763766

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM1562968_MM18_ARN0008_s1h1_Moe430p2.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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