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Sample GSM157189 Query DataSets for GSM157189
Status Public on Jan 20, 2008
Title Au_Time8hoursSize20nmreplicate0Concentration10%
Sample type RNA
 
Source name Human Skin Fibroblast
Organism Homo sapiens
Characteristics Young male
Treatment protocol Au particles of 20nm were added in culture medium at concentration of 10%. Cells were collected 8hours after treatment.
Growth protocol Cells were 100% confluent when treatment.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy mini kit
Label biotin
Label protocol Illumina TotalPrep
 
Hybridization protocol Illumina Standard protocol
Scan protocol Illumina scanner
Description Gene expression data of Human Skin Fibroblast treated with Au nanoparticles
Data processing The data was analyzed with bioconductor and GeneSpring
 
Submission date Jan 22, 2007
Last update date Feb 12, 2007
Contact name Lianghao Ding
E-mail(s) lianghao.ding@utsouthwestern.edu
Phone 214-648-5892
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL2507
Series (1)
GSE6818 Cell response to Au nanoparticles

Data table header descriptions
ID_REF TargetID
VALUE Signal intensity after Quantile normalization

Data table
ID_REF VALUE
pheA 121.392296
lysA 128.0795
trpF 115.72309
GI_10047089-S 113.297455
GI_10047091-S 148.41026
GI_10047093-S 1033.6359
GI_10047099-S 185.31027
GI_10047103-S 2187.7493
GI_10047105-S 140.50256
GI_10047121-S 130.94362
GI_10047123-S 259.59744
GI_10047133-A 114.18464
GI_10047133-I 131.63332
GI_10092578-S 128.6564
GI_10092585-S 287.73083
GI_10092596-S 251.17184
GI_10092600-S 709.8641
GI_10092602-S 138.2077
GI_10092603-S 128.82307
GI_10092611-A 1706.8922

Total number of rows: 47292

Table truncated, full table size 1047 Kbytes.




Supplementary file Size Download File type/resource
GSM157189.txt.gz 231.2 Kb (ftp)(http) TXT

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