NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM157689 Query DataSets for GSM157689
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, no irradiation (c_nfsa_30_0h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 19696.3477 140.7628 G 205.6538 19770.3477 7833.0000 21590.9727 169 14.6689291000366 96.1341044819862 75.0083 74.0000 14.7561 124 140.7628
1002 2668.3025 19.0694 G 31.7859 2742.3025 3218.0000 1856.9220 121 12.4121704101563 86.2741548125106 74.2250 74.0000 8.1828 124 19.0694
1003 36.9868 0.2643 G 1.2739 110.9868 109.0000 16.0620 76 9.83698177337646 87.1218140687177 73.7288 74.0000 8.7479 183 0.2643
1004 95.9398 0.6856 G 1.9383 169.9398 170.0000 34.5948 83 10.2800235748291 87.6749593777945 74.9121 74.0000 9.1166 188 0.6856
1005 19.1250 0.1367 G 1.0737 94.1250 93.0000 21.0502 40 7.13649654388428 87.664535575252 74.7308 75.0000 8.4430 188 0.1367
1006 27.8750 0.1992 G 1.1782 102.8750 102.0000 11.1950 64 9.02703380584717 87.3189121587848 75.1209 75.0000 8.2126 188 0.1992
1007 18926.0117 135.2575 G 205.5567 19003.0117 6733.0000 22038.7598 181 15.1807889938354 92.4465823129094 77.4167 77.0000 10.2977 124 135.2575
1008 17173.5215 122.7331 G 195.6607 17248.5215 2438.0000 21088.3887 171 14.7554721832275 88.1552794401355 75.9545 75.0000 8.7702 114 122.7331
1010 606.0000 4.3309 G 7.9449 680.0000 773.0000 342.1850 98 11.1703834533691 85.5890606435771 74.0727 74.0000 7.7260 171 4.3309
1012 1188.7766 8.4958 G 14.5362 1262.7766 1488.0000 679.7122 94 10.9400415420532 86.8709953983443 73.6056 74.0000 8.5807 186 8.4958
1013 56.1447 0.4012 G 1.4711 132.1447 133.0000 21.9932 76 9.83698177337646 89.8242100283561 76.6264 76.0000 9.2161 188 0.4012
1014 18018.3164 128.7705 G 195.0774 18094.3164 4462.0000 21153.5156 160 14.2729930877686 92.7545532935271 77.9333 76.0000 11.1697 124 128.7705
1015 17768.9883 126.9887 G 194.0902 17845.9883 3742.0000 21314.1211 167 14.5818719863892 91.9468605801713 76.8750 77.0000 9.9646 124 126.9887
1017 51.3676 0.3671 G 1.4548 126.3676 126.0000 19.6730 68 9.30485343933105 86.8639639173817 74.5470 75.0000 7.9093 187 0.3671
1018 35.5231 0.2539 G 1.2894 108.5231 107.0000 14.7837 65 9.09728336334229 84.1657758460331 74.3536 73.0000 7.4438 187 0.2539
1019 140.7922 1.0062 G 2.3859 214.7922 228.0000 54.2530 77 9.90148735046387 90.0268038711062 75.0055 74.0000 10.6845 188 1.0062
1020 31.6349 0.2261 G 1.2038 105.6349 104.0000 11.5460 63 8.95623207092285 87.7492845669361 74.2033 74.0000 9.1662 188 0.2261
1021 15895.8662 113.6021 G 184.0046 15969.8662 3017.0000 19783.2324 174 14.8843431472778 86.7905991273018 75.1500 74.0000 8.5271 124 113.6021
1022 14911.0645 106.5641 G 169.9853 14986.0645 2602.0000 18719.4316 172 14.7985544204712 88.160924812653 74.8667 75.0000 8.7740 124 106.5641
1024 7.6286 0.0545 L 0.9427 81.6286 80.0000 13.8463 35 6.67558097839355 86.5901036153688 73.8333 74.0000 8.3934 180 0.0545

Total number of rows: 36227

Table truncated, full table size 4592 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap