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Sample GSM157691 Query DataSets for GSM157691
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 6hours after carbon-ion irradiation at 30Gy (c_nfsa_30_6h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6hours after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 18458.4355 147.5898 G 187.0972 18539.4355 4686.0000 20872.8457 167 14.5818719863892 99.0898699117676 81.6583 81.0000 12.0599 124 147.5898
1002 2285.2913 18.2727 G 24.8119 2363.2913 2880.0000 1352.7806 105 11.562445640564 95.2482138537196 79.5722 78.0000 11.4988 186 18.2727
1003 32.1364 0.2570 G 1.1225 111.1364 104.0000 32.5922 44 7.48482084274292 99.0121779284936 80.5056 79.0000 13.3415 186 0.2570
1004 56.8451 0.4545 G 1.3209 137.8451 136.0000 20.4145 71 9.50789165496826 104.358983222017 83.3022 81.0000 15.5727 188 0.4545
1005 10.9394 0.0875 L 0.9680 90.9394 93.0000 9.4771 33 6.48204469680786 93.9473600142857 80.5385 80.0000 9.2982 188 0.0875
1006 21.7640 0.1740 G 1.0093 101.7640 93.0000 46.5253 89 10.6451082229614 100.826182579931 80.6631 80.0000 13.8841 193 0.1740
1007 19272.4102 154.0982 G 196.1437 19354.4102 5625.0000 21835.9199 175 14.9270534515381 98.6746346311304 83.0083 82.0000 11.1164 124 154.0982
1008 15933.8398 127.4037 G 167.8643 16010.8398 3881.0000 19017.2363 158 14.1835060119629 95.379640523265 79.3917 77.0000 12.2531 124 127.4037
1010 566.6512 4.5308 G 6.3190 643.6512 753.0000 256.5984 86 10.4641580581665 101.860292860883 78.8736 77.0000 16.5735 188 4.5308
1012 754.0804 6.0295 G 8.8247 829.0804 940.0000 411.9906 87 10.5248203277588 93.9504089718217 77.3149 75.0000 12.6336 187 6.0295
1013 53.9825 0.4316 G 1.3187 130.9825 115.0000 66.8422 57 8.51907634735107 99.3296048134104 80.1229 77.0000 14.8864 185 0.4316
1014 14396.3174 115.1099 G 160.1853 14473.3174 2006.0000 18243.4277 169 14.6689291000366 90.3535999522952 78.0750 77.0000 8.9024 124 115.1099
1015 15829.6563 126.5706 G 166.9167 15908.6563 3863.0000 19084.2070 165 14.4942932128906 95.308953709247 79.4500 79.0000 10.8726 124 126.5706
1017 50.7759 0.4060 G 1.3428 127.7759 112.0000 59.4811 58 8.59348011016846 95.1557374953481 78.4890 77.0000 12.1038 188 0.4060
1018 28.6296 0.2289 G 1.1479 105.6296 108.0000 12.4176 54 8.29185962677002 92.0193076496177 77.8022 77.0000 10.0129 188 0.2289
1019 77.5211 0.6198 G 1.6995 154.5211 158.0000 28.6144 71 9.50789165496826 90.9198442304648 76.3462 77.0000 9.2799 188 0.6198
1020 25.1538 0.2011 G 1.0309 102.1538 103.0000 9.6783 39 7.04672574996948 99.094931837357 79.7637 77.0000 14.7300 188 0.2011
1021 16106.0059 128.7803 G 166.6933 16185.0059 4496.0000 18961.0801 161 14.3175268173218 97.09453819474 79.9083 79.0000 12.0630 124 128.7803
1022 15851.7236 126.7471 G 166.1107 15931.7236 5289.0000 18630.4941 154 14.0028171539307 95.9102954751365 81.1667 80.0000 10.6069 124 126.7471
1024 11.4286 0.0914 L 0.9736 87.4286 88.0000 10.5351 35 6.67558097839355 89.7972651165194 76.2527 76.0000 9.1982 188 0.0914

Total number of rows: 36227

Table truncated, full table size 4609 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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