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Sample GSM157695 Query DataSets for GSM157695
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 3 days after carbon-ion irradiation at 30Gy (c_nfsa_30_d3_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 22812.1074 168.1767 G 231.6048 22888.1074 6097.0000 26089.9922 188 15.4715557098389 98.8239715865642 78.1250 76.0000 15.2160 124 168.1767
1002 1828.1428 13.4775 G 22.1479 1900.1428 2428.0000 1075.5114 121 12.4121704101563 85.7932018016001 72.4000 72.0000 9.1955 124 13.4775
1003 22.8028 0.1681 G 1.1280 93.8028 91.0000 12.5481 71 9.50789165496826 83.1583671233247 71.4890 71.0000 8.1056 188 0.1681
1004 83.3218 0.6143 G 1.8635 154.3218 158.0000 25.1864 87 10.5248203277588 82.8132492712914 70.7680 71.0000 7.8755 187 0.6143
1005 12.7660 0.0941 G 1.0068 83.7660 86.0000 10.1839 47 7.73577785491943 83.2019680133885 71.4862 71.0000 8.1346 187 0.0941
1006 18.0167 0.1328 G 1.0275 91.0167 94.0000 11.3468 60 8.74038791656494 88.5838223987007 73.7692 73.0000 10.3892 188 0.1328
1007 21611.0547 159.3223 G 256.9422 21683.0547 9064.0000 24521.6230 188 15.4715557098389 84.3888519969343 73.4583 72.0000 8.2592 124 159.3223
1008 19294.3184 142.2427 G 209.0635 19371.3184 5159.0000 22370.0254 178 15.0544557571411 92.6575651688014 77.5833 77.0000 10.4384 124 142.2427
1010 509.4615 3.7559 G 6.8464 582.4615 697.0000 250.2200 106 11.617374420166 85.075584991527 72.3462 73.0000 8.0504 188 3.7559
1012 959.0686 7.0705 G 11.8961 1032.0686 1329.0000 520.5108 104 11.5072546005249 86.7568310433252 73.2747 73.0000 9.1712 188 7.0705
1013 53.6622 0.3956 G 1.4648 124.6622 126.0000 19.4494 74 9.70668506622314 85.1024260988734 72.1648 71.0000 9.4016 188 0.3956
1014 18229.8730 134.3953 G 213.9261 18303.8730 4405.0000 22039.0215 184 15.306079864502 85.5616509234077 74.0833 74.0000 7.7078 124 134.3953
1015 18099.5703 133.4347 G 209.6478 18173.5703 4501.0000 21972.3340 186 15.3890399932861 86.6862101582331 75.2667 74.0000 8.4575 124 133.4347
1017 181.2667 1.3363 G 3.0483 252.2667 275.0000 66.9039 90 10.7047443389893 82.7559374091995 71.1813 71.0000 7.8373 188 1.3363
1018 35.0147 0.2581 G 1.2596 106.0147 106.0000 13.2936 68 9.30485343933105 84.1683458077187 71.0495 71.0000 8.7789 188 0.2581
1019 101.5341 0.7485 G 2.0641 172.5341 172.0000 41.8064 88 10.5851345062256 83.5869647100949 71.2418 71.0000 8.3913 188 0.7485
1020 34.4286 0.2538 G 1.2637 105.4286 103.0000 14.0984 77 9.90148735046387 83.4261920247902 71.2088 71.0000 8.2841 188 0.2538
1021 18795.1270 138.5625 G 221.9039 18868.1270 4431.0000 22316.2344 184 15.306079864502 85.0283818154163 73.1167 73.0000 8.0189 124 138.5625
1022 18669.3516 137.6353 G 213.9937 18743.3516 5045.0000 22263.2754 184 15.306079864502 87.5883155330315 74.6417 74.0000 9.0589 124 137.6353
1024 7.6667 0.0565 L 0.9068 79.6667 81.0000 8.9641 30 6.18038702011108 87.8576203973976 72.8266 72.0000 10.5717 179 0.0565

Total number of rows: 36227

Table truncated, full table size 4596 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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