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Sample GSM157699 Query DataSets for GSM157699
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 20 days after carbon-ion irradiation at 30Gy (c_nfsa_30_d20_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 20days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 17403.9629 132.7598 G 196.1656 17479.9629 2929.0000 21451.2852 187 15.4303531646729 89.1081812871916 76.9833 76.0000 8.7388 124 132.7598
1002 2394.9456 18.2690 G 27.3723 2471.9456 3075.0000 1575.9053 112 11.9416427612305 90.3083223056181 77.6319 77.0000 8.8722 188 18.2690
1003 26.7377 0.2040 G 1.1411 104.7377 104.0000 12.9866 61 8.81292343139648 91.786088915981 78.0549 78.0000 9.1907 188 0.2040
1004 90.7647 0.6924 G 1.8553 167.7647 172.0000 34.6894 85 10.4031419754028 90.4241160209653 76.9615 77.0000 8.9494 188 0.6924
1005 14.0732 0.1074 G 1.0152 90.0732 91.0000 10.8906 41 7.22515201568604 88.7227145335082 76.5944 76.0000 8.4818 186 0.1074
1006 38.6613 0.2949 G 1.2228 115.6613 108.0000 43.8564 62 8.88486671447754 94.5877866137781 77.2418 77.0000 11.7252 188 0.2949
1007 17190.1035 131.1284 G 182.8667 17269.1035 3180.0000 21144.6191 184 15.306079864502 94.4354981651486 78.0250 79.0000 10.2903 124 131.1284
1008 15436.3516 117.7506 G 170.1794 15514.3516 2856.0000 19513.7383 170 14.7122640609741 91.1647036302299 77.9167 78.0000 8.7765 124 117.7506
1010 523.7386 3.9951 G 6.7623 599.7386 714.0000 284.0502 88 10.5851345062256 88.6889285148156 76.3457 76.0000 8.4593 168 3.9951
1012 798.2643 6.0893 G 9.8918 873.2643 1066.0000 470.9895 87 10.5248203277588 88.2816678767807 75.8956 75.0000 8.8544 188 6.0893
1013 55.9857 0.4271 G 1.4519 131.9857 132.0000 23.3535 70 9.44069766998291 90.9051567769627 77.1154 76.0000 9.9368 188 0.4271
1014 15143.9941 115.5204 G 169.5083 15220.9941 2153.0000 19546.9629 175 14.9270534515381 89.7949941731373 77.6500 77.0000 8.5300 124 115.5204
1015 15176.3467 115.7672 G 167.0978 15254.3467 2990.0000 19646.1074 178 15.0544557571411 91.289943128066 78.8667 78.0000 8.8600 124 115.7672
1017 39.5763 0.3019 G 1.2789 116.5763 112.0000 15.8737 59 8.66724491119385 91.155099809769 77.0549 77.0000 9.4367 188 0.3019
1018 34.3276 0.2619 G 1.2331 113.3276 114.0000 17.1900 58 8.59348011016846 91.9017076037864 79.5611 79.0000 8.6011 186 0.2619
1019 114.1067 0.8704 G 2.1178 193.1067 206.0000 44.7743 75 9.77204990386963 91.1822566420399 78.3111 79.0000 8.1215 186 0.8704
1020 28.3387 0.2162 G 1.1440 107.3387 108.0000 12.7456 62 8.88486671447754 93.8269207183229 79.4231 79.0000 9.8846 188 0.2162
1021 16108.4453 122.8774 G 175.0098 16186.4453 3027.0000 20418.6250 175 14.9270534515381 92.4887716886039 78.4833 78.0000 9.6592 124 122.8774
1022 16100.9092 122.8199 G 167.7825 16181.9092 2994.0000 20152.5703 168 14.6254653930664 96.4457763884381 80.3918 81.0000 10.2972 101 122.8199
1024 56.1707 I 1.4764 135.1707 91.0000 124.3594 41 7.22515201568604 91.5561656998139 78.0385 79.0000 8.3708 188 0.4285

Total number of rows: 36227

Table truncated, full table size 4588 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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