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Sample GSM157701 Query DataSets for GSM157701
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, no irradiation (c_mmca_30_0h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 16588.5488 135.9166 G 181.3364 16665.5488 3541.0000 19842.7578 179 15.0966844558716 91.9040405625585 77.6134 77.0000 9.9360 123 135.9166
1002 5939.0337 48.6609 G 65.4867 6016.0337 6402.0000 4567.6973 121 12.4121704101563 91.8665257757061 76.7983 77.0000 9.9110 123 48.6609
1003 118.9367 0.9745 G 2.1628 193.9367 196.0000 42.2213 79 10.0292530059814 89.6697556449991 76.1105 75.0000 9.7798 187 0.9745
1004 73.0390 0.5984 G 1.6892 146.0390 143.0000 27.1415 77 9.90148735046387 86.453609353273 73.7418 73.0000 8.9691 188 0.5984
1005 18.8246 0.1542 G 1.0817 90.8246 91.0000 8.5330 57 8.51907634735107 83.9627372835668 72.0824 72.0000 7.9752 188 0.1542
1006 21.7692 0.1784 G 1.0977 96.7692 97.0000 10.7553 52 8.1368579864502 88.1546056311017 74.3901 75.0000 8.7697 188 0.1784
1007 16103.4492 131.9420 G 177.9475 16179.4492 3067.0000 19505.2754 178 15.0544557571411 90.9226175863159 77.7500 76.0000 9.9484 124 131.9420
1008 16009.4824 131.1721 G 182.7545 16083.4824 4858.0000 17984.6504 147 13.6808700561523 88.0059440599436 74.8462 74.0000 9.3373 188 131.1721
1010 306.7976 2.5137 G 4.5075 377.7976 436.0000 155.2772 84 10.3417663574219 83.8147610006879 71.0867 71.0000 8.5432 156 2.5137
1012 553.8276 4.5377 G 7.2566 627.8276 735.0000 317.3447 87 10.5248203277588 86.5176067110834 74.3556 74.0000 8.3451 186 4.5377
1013 31.2182 0.2558 G 1.1831 109.2182 108.0000 13.3875 55 8.36828422546387 92.312341635301 76.6813 78.0000 9.5416 188 0.2558
1014 15119.5566 123.8806 G 172.2369 15195.5566 3728.0000 18387.0469 162 14.3619222640991 88.224749079021 76.7167 76.0000 8.1498 124 123.8806
1015 14328.4004 117.3983 G 169.3738 14402.4004 2931.0000 17805.9805 167 14.5818719863892 85.0332197545928 74.2167 74.0000 7.3555 124 117.3983
1017 44.7231 0.3664 G 1.3640 117.7231 119.0000 16.9719 65 9.09728336334229 86.3091737710964 73.9611 73.0000 8.8728 186 0.3664
1018 94.0400 0.7705 G 1.9366 168.0400 178.0000 38.4588 75 9.77204990386963 86.7722772984221 73.5000 74.0000 8.5149 188 0.7705
1019 140.8133 1.1537 G 2.4751 213.8133 219.0000 65.0064 75 9.77204990386963 86.386143972902 73.2527 73.0000 8.9241 188 1.1537
1020 22.9104 0.1877 G 1.1077 98.9104 99.0000 11.0369 67 9.23618125915527 89.2927166663115 75.3077 76.0000 8.8618 188 0.1877
1021 16867.2656 138.2002 G 164.7549 16944.2656 6249.0000 18508.3066 145 13.5874843597412 102.845301673295 80.3083 77.0000 17.2302 124 138.2002
1022 15191.4053 124.4692 G 165.7864 15267.4053 3660.0000 18302.2148 155 14.04820728302 92.0908397856415 76.9000 76.0000 10.7272 124 124.4692
1024 9.7353 0.0798 L 0.9535 82.7353 83.0000 9.1308 34 6.57952451705933 86.7678679782643 73.2949 73.0000 9.1786 162 0.0798

Total number of rows: 36227

Table truncated, full table size 4585 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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