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Sample GSM157702 Query DataSets for GSM157702
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, no irradiation (c_mmca_30_0h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 17709.5254 164.1003 G 179.0046 17789.5254 5634.0000 19672.1660 164 14.4503040313721 99.3802903920753 81.8136 80.0000 12.9202 122 164.1003
1002 5540.4873 51.3394 G 60.6357 5618.4873 5645.0000 4248.9092 119 12.3091630935669 92.6597774080802 78.0424 78.0000 9.7732 122 51.3394
1003 114.7125 1.0630 G 2.1314 189.7125 200.0000 38.7573 80 10.0925302505493 89.0092570707163 74.9341 75.0000 9.3395 188 1.0630
1004 56.9091 0.5273 G 1.4947 131.9091 134.0000 22.8611 77 9.90148735046387 88.2518632420827 75.1648 75.0000 8.8346 188 0.5273
1005 15.6047 0.1446 G 1.0203 91.6047 92.0000 12.4847 43 7.3992772102356 89.7798707271681 76.2912 76.0000 9.1866 188 0.1446
1006 23.7188 0.2198 G 1.1149 100.7188 96.0000 23.5375 64 9.02703380584717 90.3393997625636 75.8791 77.0000 8.8929 188 0.2198
1007 16109.9824 149.2786 G 177.1865 16186.9824 3993.0000 19253.0996 176 14.9696416854858 91.3556385877756 78.0833 77.0000 9.5704 124 149.2786
1008 14013.6895 129.8539 G 154.3813 14090.6895 2617.0000 17336.2344 160 14.2729930877686 91.2719952581326 77.4333 77.0000 9.5147 124 129.8539
1010 316.6795 2.9344 G 3.9886 391.6795 437.0000 134.8842 78 9.96557521820068 98.1987277260454 76.9725 75.0000 15.4658 188 2.9344
1012 495.7831 4.5940 G 6.1504 574.7831 639.0000 254.8673 83 10.2800235748291 93.4549839629656 78.9451 79.0000 9.6367 188 4.5940
1013 36.3396 0.3367 G 1.2229 115.3396 104.0000 47.2843 53 8.21472454071045 94.3169364282602 79.4615 79.0000 10.2113 188 0.3367
1014 15840.1143 146.7779 G 171.8077 15919.1143 4228.0000 18435.4590 159 14.2283201217651 92.6565856000605 79.9583 79.0000 9.1044 124 146.7779
1015 14800.1719 137.1416 G 161.4092 14880.1719 3006.0000 18281.8965 165 14.4942932128906 92.1891127284126 80.3167 80.0000 8.1261 124 137.1416
1017 45.9701 0.4260 G 1.3622 125.9701 126.0000 19.9723 67 9.23618125915527 92.4776417056229 79.4671 80.0000 8.3184 158 0.4260
1018 100.2237 0.9287 G 1.9342 180.2237 190.0000 43.2738 76 9.83698177337646 93.1787049305474 80.2558 80.0000 8.7858 178 0.9287
1019 130.5067 1.2093 G 2.3037 207.5067 227.0000 60.0805 75 9.77204990386963 90.0742970659356 77.9231 77.0000 8.7162 188 1.2093
1020 22.0000 0.2039 G 1.0924 100.0000 101.0000 11.3394 55 8.36828422546387 91.5375879804188 79.5525 78.0000 9.0251 187 0.2039
1021 14431.5098 133.7255 G 159.4031 14508.5098 2762.0000 17944.6484 163 14.4061803817749 91.0177614063241 77.9667 77.0000 9.3452 124 133.7255
1022 15187.3594 140.7294 G 158.1015 15268.3594 4930.0000 18072.7598 155 14.04820728302 96.5731552649711 81.0192 81.0000 10.3821 108 140.7294
1024 12.7391 0.1180 G 1.0093 89.7391 89.0000 10.5983 46 7.65303993225098 88.9096405165073 77.4413 77.0000 7.9398 185 0.1180

Total number of rows: 36227

Table truncated, full table size 4580 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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