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Sample GSM157706 Query DataSets for GSM157706
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after carbon-ion irradiation at 30Gy (c_mmca_30_d1_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 15608.0811 137.5443 G 163.1457 15685.0811 3792.0000 18560.1758 187 15.4303531646729 96.1415768963349 78.4250 77.0000 12.7610 124 137.5443
1002 4797.7954 42.2800 G 49.3818 4875.7954 6100.0000 3554.8628 129 12.8159236907959 98.7367311755758 78.6833 78.0000 13.8245 124 42.2800
1003 136.0241 1.1987 G 2.2435 211.0241 214.0000 44.5656 83 10.2800235748291 94.0584265842021 76.3077 75.0000 12.7056 188 1.1987
1004 59.1818 0.5215 G 1.5450 133.1818 135.0000 21.8874 77 9.90148735046387 86.2018899122634 74.5385 74.0000 8.1346 188 0.5215
1005 12.8611 0.1133 L 0.9922 86.8611 88.0000 8.1314 36 6.7702751159668 87.5462383575074 74.6868 74.0000 9.0308 188 0.1133
1006 20.9259 0.1844 G 1.0665 95.9259 96.0000 10.0699 54 8.29185962677002 89.9438097228758 75.5580 75.0000 9.9625 187 0.1844
1007 16002.3369 141.0186 G 175.2884 16077.3369 4987.0000 19104.6113 192 15.6352806091309 91.7193318559273 76.9417 75.0000 11.1462 124 141.0186
1008 13052.5537 115.0240 G 148.6286 13129.5537 1641.0000 17463.7617 188 15.4715557098389 88.3379932806497 77.0000 77.0000 7.5587 124 115.0240
1010 336.7791 2.9678 G 4.2926 411.7791 476.0000 159.5989 86 10.4641580581665 95.9269449080913 78.0989 75.0000 13.9513 188 2.9678
1012 585.6334 5.1608 G 7.1153 661.6334 754.0000 303.6630 90 10.7047443389893 92.9877315862715 77.3132 76.0000 11.3252 188 5.1608
1013 24.7619 0.2182 G 1.1254 100.7619 100.0000 11.1863 63 8.95623207092285 89.5316588032944 75.5385 76.0000 9.0211 188 0.2182
1014 14049.0791 123.8058 G 153.9969 14126.0791 1909.0000 17563.3105 180 15.1387948989868 91.7296404996265 75.5750 77.0000 9.8198 124 123.8058
1015 14353.9941 126.4928 G 164.0363 14429.9941 2192.0000 18259.6875 179 15.0966844558716 87.968289581931 75.7667 76.0000 7.9789 124 126.4928
1017 31.1967 0.2749 G 1.2017 106.1967 106.0000 14.6811 61 8.81292343139648 88.3732091220828 75.3022 75.0000 8.9155 188 0.2749
1018 115.9872 1.0221 G 2.0941 190.9872 197.0000 49.1631 78 9.96557521820068 91.2031673089703 76.6923 75.0000 10.8021 188 1.0221
1019 126.0506 1.1108 G 2.2792 201.0506 213.0000 55.9129 79 10.0292530059814 88.2094430111324 74.7253 75.0000 8.8063 188 1.1108
1020 24.8421 0.2189 G 1.1211 100.8421 100.0000 11.1557 57 8.51907634735107 89.9474254196776 77.0773 76.0000 9.2983 187 0.2189
1021 13629.3926 120.1074 G 150.0520 13708.3926 1833.0000 17688.5293 188 15.4715557098389 91.3576306060949 79.9417 79.0000 8.2384 124 120.1074
1022 14836.6191 130.7459 G 149.4786 14915.6191 2926.0000 18459.9492 170 14.7122640609741 99.7842962257627 81.6500 79.0000 13.8562 124 130.7459
1024 12.0000 0.1057 L 0.9759 88.0000 90.0000 11.9776 41 7.22515201568604 90.1710261386314 76.0556 76.0000 9.4474 186 0.1057

Total number of rows: 36227

Table truncated, full table size 4588 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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