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Sample GSM157709 Query DataSets for GSM157709
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 5 days after carbon-ion irradiation at 30Gy (c_mmca_30_d5_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 5days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 16620.6348 122.0280 G 195.4560 16693.6348 3742.0000 19771.6270 196 15.7973079681396 85.4086479888295 73.4833 73.0000 8.2724 124 122.0280
1002 3799.8440 27.8983 G 44.8646 3872.8440 4607.0000 2887.9771 143 13.4934520721436 86.3229117891361 73.6667 73.0000 8.8819 124 27.8983
1003 75.3810 0.5534 G 1.7268 149.3810 152.0000 23.3773 84 10.3417663574219 86.5065139890018 73.3626 74.0000 8.3377 188 0.5534
1004 75.8000 0.5565 G 1.6903 150.8000 153.0000 22.5513 80 10.0925302505493 89.212562715798 75.3901 75.0000 9.4750 188 0.5565
1005 21.0000 0.1542 G 1.0957 94.0000 96.0000 11.2120 55 8.36828422546387 85.7891573041898 73.1667 73.0000 8.5261 186 0.1542
1006 65.9552 0.4842 G 1.5964 140.9552 97.0000 145.5621 67 9.23618125915527 88.2955777469292 75.1111 75.0000 8.8637 186 0.4842
1007 17644.1914 129.5429 G 198.2112 17720.1914 5095.0000 20141.9766 191 15.5945100784302 89.4005501167439 75.9492 76.0000 8.9337 122 129.5429
1008 15651.3721 114.9117 G 173.8597 15727.3721 2615.0000 19198.5566 182 15.2226667404175 90.460154043328 77.5417 76.0000 9.6401 124 114.9117
1010 477.6238 3.5067 G 6.3475 551.6238 665.0000 255.7007 103 11.4517974853516 86.9042399023232 73.8626 74.0000 8.6028 188 3.5067
1012 816.7053 5.9962 G 9.4882 892.7053 1068.0000 410.7402 95 10.9980792999268 94.0859699158264 77.0165 76.0000 12.0573 188 5.9962
1013 41.0870 0.3017 G 1.3266 115.0870 114.0000 15.4214 69 9.37302112579346 86.7541534266798 74.3626 74.0000 8.5028 188 0.3017
1014 15097.1914 110.8429 G 167.4012 15173.1914 4124.0000 18373.0605 180 15.1387948989868 90.6396568055881 76.3833 76.0000 9.7598 124 110.8429
1015 16366.2070 120.1600 G 182.6724 16442.2070 2912.0000 19741.9883 185 15.3476161956787 90.0092602353333 77.4167 76.0000 9.3395 124 120.1600
1017 142.5385 1.0465 G 2.4821 217.5385 228.0000 48.6565 78 9.96557521820068 87.6446356876827 74.1648 75.0000 8.4298 188 1.0465
1018 93.9467 0.6898 G 1.9274 167.9467 172.0000 28.0276 75 9.77204990386963 87.1360630390537 74.3242 74.0000 8.7574 188 0.6898
1019 189.9222 1.3944 G 2.9686 265.9222 296.0000 80.7098 90 10.7047443389893 89.5775740955875 76.0220 76.0000 9.0517 188 1.3944
1020 44.5616 0.3272 G 1.3322 119.5616 119.0000 15.8555 73 9.64087581634521 89.747122618856 75.3956 75.0000 9.8314 188 0.3272
1021 15196.2607 111.5703 G 173.2960 15271.2607 3310.0000 18762.0234 186 15.3890399932861 88.1224049004647 75.5333 75.0000 8.7483 124 111.5703
1022 15015.2383 110.2412 G 166.4605 15092.2383 2309.0000 19234.1777 187 15.4303531646729 90.6655857396838 78.1864 77.0000 9.1104 122 110.2412
1024 9.8378 0.0722 L 0.9754 83.8378 84.0000 9.8352 37 6.86366271972656 85.9550597886918 73.9231 74.0000 7.9700 188 0.0722

Total number of rows: 36227

Table truncated, full table size 4591 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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