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Sample GSM157717 Query DataSets for GSM157717
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after carbon-ion irradiation at 30Gy (c_mca4_30_d1_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 15495.3623 153.9380 G 161.2825 15576.3623 2984.0000 18799.7168 187 15.4303531646729 96.5781021859138 82.0417 81.0000 10.3854 124 153.9380
1002 4622.5464 45.9225 G 47.0738 4702.5464 6212.0000 3106.1355 110 11.8345403671265 99.8972878541356 81.3626 80.0000 13.2649 188 45.9225
1003 102.9875 1.0231 G 1.9666 180.9875 190.0000 38.7787 80 10.0925302505493 92.0323455520138 78.1374 78.0000 9.3549 188 1.0231
1004 64.9481 0.6452 G 1.5176 141.9481 141.0000 24.4524 77 9.90148735046387 93.533211591223 79.0385 77.0000 11.0221 188 0.6452
1005 16.0508 0.1595 G 1.0509 92.0508 93.0000 10.6650 59 8.66724491119385 87.5932628219315 75.7747 76.0000 7.7288 188 0.1595
1006 22.5882 0.2244 G 1.0852 99.5882 99.0000 11.6555 51 8.0582389831543 91.7673416539893 77.1099 77.0000 9.8449 188 0.2244
1007 16690.0234 165.8063 G 159.6536 16768.0234 4763.0000 19160.1641 176 14.9696416854858 105.02752435975 81.6500 78.0000 18.0183 124 165.8063
1008 13419.7393 133.3178 G 148.6225 13497.7393 1365.0000 17552.4707 182 15.2226667404175 90.8189319111478 77.8417 78.0000 8.5459 124 133.3178
1010 324.1477 3.2202 G 4.4141 401.1477 461.0000 159.2473 88 10.5851345062256 90.8796833510858 77.6593 77.0000 9.2531 188 3.2202
1012 450.4070 4.4745 G 5.8016 527.4070 582.0000 235.4615 86 10.4641580581665 90.9078631808036 77.0989 77.0000 9.2719 188 4.4745
1013 27.9830 0.2780 G 1.1731 104.9830 105.0000 13.5139 59 8.66724491119385 89.4957595128828 77.9227 77.0000 8.3305 187 0.2780
1014 13691.3750 136.0164 G 146.2809 13770.3750 2647.0000 17676.3379 178 15.0544557571411 94.1365411509719 79.0667 79.0000 10.0910 124 136.0164
1015 16052.0830 159.4687 G 155.0075 16132.0830 4333.0000 18838.4883 159 14.2283201217651 104.072903940347 82.9750 80.0000 16.0486 124 159.4687
1017 34.0526 0.3383 G 1.0769 111.0526 111.0000 13.3672 38 6.95579624176025 103.125709753967 81.0769 77.0000 17.4171 188 0.3383
1018 117.6351 1.1686 G 2.0740 195.6351 204.0000 49.2453 74 9.70668506622314 94.3255797485711 78.3407 78.0000 10.8837 188 1.1686
1019 108.8831 1.0817 G 2.0084 186.8831 192.0000 46.5657 77 9.90148735046387 93.0506590337338 78.2857 78.0000 10.0338 188 1.0817
1020 26.6379 0.2646 G 1.1080 105.6379 106.0000 11.6718 58 8.59348011016846 95.3380438144677 80.0330 79.0000 10.8920 188 0.2646
1021 17370.4629 172.5661 G 179.6754 17453.4629 7387.0000 18678.7520 147 13.6808700561523 97.138864831749 82.8571 83.0000 9.4259 188 172.5661
1022 16742.6406 166.3290 G 176.2988 16822.6406 6839.0000 18224.5488 144 13.5405502319336 95.4211875140537 81.2102 80.0000 10.2808 163 166.3290
1024 15.1613 0.1506 G 1.0220 93.1613 82.0000 46.8556 93 10.8816947937012 91.1534012978998 78.0585 78.0000 8.7689 213 0.1506

Total number of rows: 36227

Table truncated, full table size 4585 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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