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Sample GSM157718 Query DataSets for GSM157718
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after carbon-ion irradiation at 30Gy (c_mca4_30_d1_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 15086.4160 137.8619 G 159.3162 15162.4160 3065.0000 18631.5098 192 15.6352806091309 95.1718360413093 78.4167 76.0000 12.7812 124 137.8619
1002 4181.8638 38.2145 G 45.7585 4259.8638 4247.0000 3410.1328 134 13.0619335174561 93.0945206839573 78.4500 78.0000 10.0630 124 38.2145
1003 111.9872 1.0234 G 2.0153 188.9872 197.0000 35.4627 78 9.96557521820068 93.7756248112319 78.6758 77.0000 11.1837 188 1.0234
1004 86.2927 0.7886 G 1.7765 162.2927 157.0000 69.3368 82 10.2179079055786 91.3576604874414 77.1923 76.0000 10.2384 188 0.7886
1005 18.6667 0.1706 G 1.0127 94.6667 97.0000 10.4620 39 7.04672574996948 93.4795553596788 77.1758 76.0000 11.6530 188 0.1706
1006 22.6923 0.2074 G 1.0669 97.6923 97.0000 9.8049 52 8.1368579864502 91.5663319822079 76.4780 75.0000 11.0442 188 0.2074
1007 17815.9277 162.8046 G 152.3570 17893.9277 7627.0000 19415.0449 166 14.5381488800049 117.447366154465 81.9500 78.0000 26.2982 124 162.8046
1008 16335.1602 149.2731 G 140.0607 16414.1602 5580.0000 18567.6426 151 13.8657550811768 117.193164411887 82.0924 79.0000 25.4621 123 149.2731
1010 349.5625 3.1944 G 4.4743 425.5625 464.0000 146.7476 80 10.0925302505493 95.1116924699104 76.7802 76.0000 12.7411 188 3.1944
1012 443.7024 4.0546 G 5.9042 518.7024 619.0000 246.6481 84 10.3417663574219 87.8534029130271 75.1868 75.0000 8.5689 188 4.0546
1013 22.0351 0.2014 G 1.1074 98.0351 97.0000 11.5818 57 8.51907634735107 88.5241770927208 76.3315 76.0000 8.3495 187 0.2014
1014 14305.4697 130.7255 G 153.2803 14382.4697 2169.0000 18201.7852 168 14.6254653930664 93.8311478510519 78.1667 77.0000 11.2208 124 130.7255
1015 15361.8770 140.3791 G 154.2762 15441.8770 3545.0000 18728.5977 172 14.7985544204712 100.092412304062 80.9750 80.0000 13.3949 124 140.3791
1017 30.5273 0.2790 G 1.1971 106.5273 106.0000 11.5599 55 8.36828422546387 88.9885242053835 75.8736 76.0000 8.6590 188 0.2790
1018 119.3243 1.0904 G 2.1164 196.3243 211.0000 50.2236 74 9.70668506622314 92.7640470500657 77.5760 77.0000 10.5094 164 1.0904
1019 99.9595 0.9134 G 1.9282 175.9595 185.0000 39.3489 74 9.70668506622314 91.2537077085557 76.3457 76.0000 10.1691 168 0.9134
1020 23.1395 0.2115 G 1.0262 103.1395 104.0000 11.7485 43 7.3992772102356 100.505528693715 81.5934 80.0000 13.6704 188 0.2115
1021 14352.6172 131.1563 G 156.6202 14430.6172 1825.0000 18276.6660 177 15.0121088027954 92.1376270134907 78.5333 78.0000 9.4251 124 131.1563
1022 14463.0723 132.1657 G 155.9358 14541.0723 2532.0000 18243.8145 169 14.6689291000366 93.2503923172842 78.9833 78.0000 10.1669 124 132.1657
1024 13.1481 0.1201 L 0.9710 92.1481 82.0000 41.4069 54 8.29185962677002 94.8966825831472 79.4274 79.0000 10.5978 121 0.1201

Total number of rows: 36227

Table truncated, full table size 4589 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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