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Sample GSM157723 Query DataSets for GSM157723
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 20 days after carbon-ion irradiation at 30Gy (c_mca4_30_d20_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 20days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 21007.0918 183.7594 G 224.6042 21084.0918 5240.0000 24527.4609 189 15.5126485824585 93.8722244769546 78.2500 77.0000 11.2481 124 183.7594
1002 3122.9907 27.3183 G 27.9087 3196.9907 4078.0000 1898.2305 111 11.8882122039795 114.551858560554 80.2328 74.0000 27.0346 120 27.3183
1003 49.9474 0.4369 G 1.3763 123.9474 124.0000 16.3005 76 9.83698177337646 90.0561859297161 76.3094 74.0000 10.7041 187 0.4369
1004 68.9394 0.6030 G 1.2223 146.9394 143.0000 24.1604 66 9.16699600219727 120.213326467439 81.5440 78.0000 28.1422 188 0.6030
1005 35.3088 0.3089 G 1.2542 109.3088 102.0000 28.5159 68 9.30485343933105 87.1512059852361 75.0714 74.0000 8.7675 188 0.3089
1006 8.2118 0.0718 L 0.8522 84.2118 82.0000 15.7832 85 10.4031419754028 98.8114357938484 77.3594 76.0000 15.2076 198 0.0718
1007 21077.4727 184.3750 G 215.4209 21155.4727 4777.0000 24172.8203 186 15.3890399932861 98.2053078725599 79.1379 78.0000 13.4702 120 184.3750
1008 19497.4336 170.5537 G 214.9575 19574.4336 3199.0000 23095.0879 175 14.9270534515381 91.0618953661741 77.1833 77.0000 9.3746 124 170.5537
1010 550.4216 4.8148 G 7.1240 626.4216 699.0000 287.7445 104 11.5072546005249 87.9307098364967 75.7527 76.0000 7.9538 188 4.8148
1012 740.4286 6.4769 G 9.1813 815.4286 982.0000 397.7387 100 11.2837915420532 88.8135944479795 74.7637 75.0000 9.2091 188 6.4769
1013 34.6000 0.3027 G 1.2416 108.6000 108.0000 15.1473 65 9.09728336334229 87.4683087742732 74.9725 74.0000 8.9789 188 0.3027
1014 19793.4141 173.1427 G 191.8229 19868.4141 4399.0000 22919.4434 166 14.5381488800049 103.576866840793 77.5000 75.0000 19.0512 124 173.1427
1015 18807.0684 164.5147 G 205.3109 18882.0684 6003.0000 22289.4473 179 15.0966844558716 91.9681875918647 76.4500 75.0000 11.3121 124 164.5147
1017 215.6512 1.8864 G 3.3064 289.6512 303.0000 90.3974 86 10.4641580581665 87.6025717358121 74.1978 74.0000 9.0684 188 1.8864
1018 56.7051 0.4960 G 1.5152 130.7051 134.0000 20.7031 78 9.96557521820068 86.2646088638303 74.2418 74.0000 8.1764 188 0.4960
1019 169.3293 1.4812 G 2.5979 244.3293 264.0000 64.0619 82 10.2179079055786 94.047734405751 76.0330 75.0000 12.6985 188 1.4812
1020 34.4286 0.3012 G 1.2172 107.4286 107.0000 15.5791 56 8.444016456604 88.2618001122988 73.7637 73.0000 10.1745 188 0.3012
1021 18053.4043 157.9220 G 199.7421 18129.4043 4085.0000 21891.3691 180 15.1387948989868 90.7640566498901 77.2667 76.0000 9.8427 124 157.9220
1022 19665.0547 172.0199 G 215.8344 19741.0547 2615.0000 24874.9297 167 14.5818719863892 91.4638890954805 75.5500 76.0000 10.3093 124 172.0199
1024 9.4048 0.0823 L 0.9537 81.4048 81.0000 11.0412 42 7.3127326965332 85.3578529808634 72.7241 72.0000 8.9052 180 0.0823

Total number of rows: 36227

Table truncated, full table size 4586 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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