NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM158607 Query DataSets for GSM158607
Status Public on Jan 31, 2007
Title Testis (E14.5-2 dpc)
Sample type RNA
 
Source name Embryonic Testis (E14.5 duplicate 2)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic testis from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
 
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
 
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
E-mail(s) lzyang@wsu.edu
Phone 1-509-335-2240
Fax 1-509-335-9688
URL http://www.wsu.edu/~griswold
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
 
Platform ID GPL1261
Series (2)
GSE6881 Embryonic Testis Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 282.1 P 0.000297
AFFX-BioB-M_at 537.3 P 0.000044
AFFX-BioB-3_at 233.1 P 0.000127
AFFX-BioC-5_at 593 P 0.00007
AFFX-BioC-3_at 611.7 P 0.000044
AFFX-BioDn-5_at 869.7 P 0.000044
AFFX-BioDn-3_at 3655.2 P 0.000052
AFFX-CreX-5_at 9823.8 P 0.000052
AFFX-CreX-3_at 9760.2 P 0.000044
AFFX-DapX-5_at 3.5 A 0.645547
AFFX-DapX-M_at 18.2 A 0.574038
AFFX-DapX-3_at 2.9 A 0.724854
AFFX-LysX-5_at 2.5 A 0.5
AFFX-LysX-M_at 2.6 A 0.910522
AFFX-LysX-3_at 3.2 A 0.574038
AFFX-PheX-5_at 5.3 A 0.686277
AFFX-PheX-M_at 1.5 A 0.916408
AFFX-PheX-3_at 13.1 A 0.470241
AFFX-ThrX-5_at 20.9 A 0.300606
AFFX-ThrX-M_at 1.1 A 0.904333

Total number of rows: 45101

Table truncated, full table size 1196 Kbytes.




Supplementary file Size Download File type/resource
GSM158607.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM158607.EXP.gz 488 b (ftp)(http) EXP
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap