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Sample GSM158610 Query DataSets for GSM158610
Status Public on Jan 31, 2007
Title Testis (E18.5-1 dpc)
Sample type RNA
 
Source name Embryonic Testis (E18.5 duplicate 1)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic testis from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
 
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
 
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
E-mail(s) lzyang@wsu.edu
Phone 1-509-335-2240
Fax 1-509-335-9688
URL http://www.wsu.edu/~griswold
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
 
Platform ID GPL1261
Series (2)
GSE6881 Embryonic Testis Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 263.5 P 0.00039
AFFX-BioB-M_at 484.3 P 0.000044
AFFX-BioB-3_at 223.8 P 0.000052
AFFX-BioC-5_at 598.5 P 0.000095
AFFX-BioC-3_at 592 P 0.000044
AFFX-BioDn-5_at 863.6 P 0.000044
AFFX-BioDn-3_at 3096.5 P 0.000044
AFFX-CreX-5_at 8274.6 P 0.000052
AFFX-CreX-3_at 8381.2 P 0.000044
AFFX-DapX-5_at 3.9 A 0.51489
AFFX-DapX-M_at 15.4 A 0.227636
AFFX-DapX-3_at 1.9 A 0.760937
AFFX-LysX-5_at 2.5 A 0.645547
AFFX-LysX-M_at 2.7 A 0.686277
AFFX-LysX-3_at 6.6 A 0.340661
AFFX-PheX-5_at 2.8 A 0.724854
AFFX-PheX-M_at 0.7 A 0.897835
AFFX-PheX-3_at 10.8 A 0.51489
AFFX-ThrX-5_at 2.5 A 0.645547
AFFX-ThrX-M_at 2.2 A 0.760937

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.




Supplementary file Size Download File type/resource
GSM158610.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM158610.EXP.gz 488 b (ftp)(http) EXP
Raw data provided as supplementary file

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