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Sample GSM158616 Query DataSets for GSM158616
Status Public on Jan 31, 2007
Title Ovary (E11.5-1 dpc)
Sample type RNA
Source name Embryonic Ovary (E11.5 duplicate 1)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic ovary from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
Phone 1-509-335-2240
Fax 1-509-335-9688
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
Platform ID GPL1261
Series (2)
GSE6882 Embryonic Ovary Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Reanalyzed by GSE119085

Data table header descriptions
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 368.2 P 0.000127
AFFX-BioB-M_at 670.6 P 0.000044
AFFX-BioB-3_at 349.1 P 0.000127
AFFX-BioC-5_at 829.4 P 0.000095
AFFX-BioC-3_at 791.1 P 0.000044
AFFX-BioDn-5_at 1384.9 P 0.000044
AFFX-BioDn-3_at 4508.4 P 0.000044
AFFX-CreX-5_at 10016.1 P 0.000052
AFFX-CreX-3_at 9911.5 P 0.000044
AFFX-DapX-5_at 1.7 A 0.631562
AFFX-DapX-M_at 20.5 A 0.147939
AFFX-DapX-3_at 15.8 A 0.216524
AFFX-LysX-5_at 0.9 A 0.686277
AFFX-LysX-M_at 3.2 A 0.814869
AFFX-LysX-3_at 12 A 0.116113
AFFX-PheX-5_at 2.4 A 0.804734
AFFX-PheX-M_at 1.3 A 0.937071
AFFX-PheX-3_at 4 A 0.772364
AFFX-ThrX-5_at 15.2 A 0.275146
AFFX-ThrX-M_at 5.1 A 0.51489

Total number of rows: 45101

Table truncated, full table size 1193 Kbytes.

Supplementary file Size Download File type/resource
GSM158616.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM158616.EXP.gz 491 b (ftp)(http) EXP
Raw data provided as supplementary file

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