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Sample GSM158621 Query DataSets for GSM158621
Status Public on Jan 31, 2007
Title Ovary (E12.5-2 dpc)
Sample type RNA
 
Source name Embryonic ovary (E12.5 duplicate 2)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic ovary from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
 
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
 
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
E-mail(s) lzyang@wsu.edu
Phone 1-509-335-2240
Fax 1-509-335-9688
URL http://www.wsu.edu/~griswold
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
 
Platform ID GPL1261
Series (2)
GSE6882 Embryonic Ovary Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 9886.5 P 0.00006
AFFX-BioB-M_at 15897.8 P 0.000044
AFFX-BioB-3_at 6402.6 P 0.000044
AFFX-BioC-5_at 19913.3 P 0.000052
AFFX-BioC-3_at 17373.2 P 0.000044
AFFX-BioDn-5_at 21896.7 P 0.000044
AFFX-BioDn-3_at 90395.8 P 0.000044
AFFX-CreX-5_at 234948.6 P 0.000052
AFFX-CreX-3_at 234041.1 P 0.000044
AFFX-DapX-5_at 69.7 A 0.645547
AFFX-DapX-M_at 203 A 0.18511
AFFX-DapX-3_at 81.7 A 0.58862
AFFX-LysX-5_at 6.2 A 0.966335
AFFX-LysX-M_at 27.4 A 0.699394
AFFX-LysX-3_at 92.1 A 0.39692
AFFX-PheX-5_at 12.1 A 0.772364
AFFX-PheX-M_at 25.6 A 0.772364
AFFX-PheX-3_at 11.3 A 0.963443
AFFX-ThrX-5_at 24.9 A 0.891061
AFFX-ThrX-M_at 17.9 A 0.904333

Total number of rows: 45101

Table truncated, full table size 1206 Kbytes.




Supplementary file Size Download File type/resource
GSM158621.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM158621.EXP.gz 487 b (ftp)(http) EXP
Raw data provided as supplementary file

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