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Sample GSM158624 Query DataSets for GSM158624
Status Public on Jan 31, 2007
Title Ovary (E14.5-2 dpc)
Sample type RNA
Source name Embryonic ovary (E14.5 duplicate 2)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic ovary from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
Phone 1-509-335-2240
Fax 1-509-335-9688
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
Platform ID GPL1261
Series (2)
GSE6882 Embryonic Ovary Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Reanalyzed by GSE119085

Data table header descriptions
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 337 P 0.00034
AFFX-BioB-M_at 537.6 P 0.000044
AFFX-BioB-3_at 249.6 P 0.00006
AFFX-BioC-5_at 723.8 P 0.000081
AFFX-BioC-3_at 632.8 P 0.000044
AFFX-BioDn-5_at 958.5 P 0.000044
AFFX-BioDn-3_at 3432.6 P 0.000044
AFFX-CreX-5_at 9322.3 P 0.000052
AFFX-CreX-3_at 9241.2 P 0.000044
AFFX-DapX-5_at 13 A 0.41138
AFFX-DapX-M_at 12.8 A 0.645547
AFFX-DapX-3_at 11.4 A 0.227636
AFFX-LysX-5_at 8.3 A 0.41138
AFFX-LysX-M_at 2.8 A 0.724854
AFFX-LysX-3_at 2.7 A 0.51489
AFFX-PheX-5_at 2.4 A 0.876428
AFFX-PheX-M_at 1 A 0.984817
AFFX-PheX-3_at 6.1 A 0.48511
AFFX-ThrX-5_at 17.8 A 0.175328
AFFX-ThrX-M_at 2 A 0.868639

Total number of rows: 45101

Table truncated, full table size 1196 Kbytes.

Supplementary file Size Download File type/resource
GSM158624.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM158624.EXP.gz 487 b (ftp)(http) EXP
Raw data provided as supplementary file

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