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Sample GSM158625 Query DataSets for GSM158625
Status Public on Jan 31, 2007
Title Ovary (E16.5-1 dpc)
Sample type RNA
 
Source name Embryonic ovary (E16.5 duplicate 1)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic ovary from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
 
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
 
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
E-mail(s) lzyang@wsu.edu
Phone 1-509-335-2240
Fax 1-509-335-9688
URL http://www.wsu.edu/~griswold
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
 
Platform ID GPL1261
Series (2)
GSE6882 Embryonic Ovary Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 520.1 P 0.00007
AFFX-BioB-M_at 773.9 P 0.000044
AFFX-BioB-3_at 565.3 P 0.000044
AFFX-BioC-5_at 1339.6 P 0.000044
AFFX-BioC-3_at 1232.3 P 0.000044
AFFX-BioDn-5_at 1587.2 P 0.000044
AFFX-BioDn-3_at 5117.4 P 0.000052
AFFX-CreX-5_at 12645.3 P 0.000052
AFFX-CreX-3_at 13168.2 P 0.000044
AFFX-DapX-5_at 9.2 A 0.425962
AFFX-DapX-M_at 21.8 A 0.340648
AFFX-DapX-3_at 15.5 A 0.617401
AFFX-LysX-5_at 1 A 0.897855
AFFX-LysX-M_at 2.3 A 0.868639
AFFX-LysX-3_at 12 A 0.227636
AFFX-PheX-5_at 1.4 A 0.724854
AFFX-PheX-M_at 2.2 A 0.852061
AFFX-PheX-3_at 4 A 0.52976
AFFX-ThrX-5_at 13.9 A 0.275146
AFFX-ThrX-M_at 0.8 A 0.883887

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.




Supplementary file Size Download File type/resource
GSM158625.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM158625.EXP.gz 488 b (ftp)(http) EXP
Raw data provided as supplementary file

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