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Sample GSM158626 Query DataSets for GSM158626
Status Public on Jan 31, 2007
Title Ovary (E16.5-2 dpc)
Sample type RNA
Source name Embryonic ovary (E16.5 duplicate 2)
Organism Mus musculus
Characteristics Time course of gene expression in the murine embryonic ovary from the time of the indifferent gonad (11.5dpc) to birth (18.5dpc)
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol Affymetrix single cycle protocol.
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Affymetrix GeneChip® Operating Software (GCOS) automates the control of GeneChip® Fluidics Stations and Scanners. In addition, GCOS acquires data, manages sample and experimental information, and performs gene expression data analysis.
Description All methodology for this dataset is identical to the previously posted dataset generated on the U74 chips.
Data processing For each microarray, probe set signal values were initially normalized by scaling to a target intensity of 125.
Submission date Jan 26, 2007
Last update date Aug 28, 2018
Contact name Lizhong Yang
Phone 1-509-335-2240
Fax 1-509-335-9688
Organization name Washington State University
Department School of Molecular Biosciences
Lab Griswold Lab/Center for Reproductive Biology
Street address 531 Fulmer Hall/POB 644660
City Pullman
State/province WA
ZIP/Postal code 99164-4660
Country USA
Platform ID GPL1261
Series (2)
GSE6882 Embryonic Ovary Developmental Time Course
GSE6916 Embryonic Testis/Ovary Developmental Time Courses
Reanalyzed by GSE119085

Data table header descriptions
VALUE A measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no call(NC)
DETECTION P-VALUE P-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 496.8 P 0.00007
AFFX-BioB-M_at 854.4 P 0.000044
AFFX-BioB-3_at 584.6 P 0.000127
AFFX-BioC-5_at 1420.3 P 0.000044
AFFX-BioC-3_at 1124 P 0.000044
AFFX-BioDn-5_at 2368.3 P 0.000044
AFFX-BioDn-3_at 5604.5 P 0.000044
AFFX-CreX-5_at 15651.9 P 0.000052
AFFX-CreX-3_at 19252.4 P 0.000044
AFFX-DapX-5_at 6.5 A 0.544587
AFFX-DapX-M_at 16.5 A 0.48511
AFFX-DapX-3_at 2.4 A 0.953518
AFFX-LysX-5_at 14.7 A 0.354453
AFFX-LysX-M_at 25.1 A 0.470241
AFFX-LysX-3_at 3.4 A 0.794268
AFFX-PheX-5_at 7.4 A 0.659339
AFFX-PheX-M_at 2.1 A 0.945787
AFFX-PheX-3_at 5 A 0.645547
AFFX-ThrX-5_at 4.9 A 0.749204
AFFX-ThrX-M_at 3.6 A 0.699394

Total number of rows: 45101

Table truncated, full table size 1198 Kbytes.

Supplementary file Size Download File type/resource
GSM158626.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM158626.EXP.gz 487 b (ftp)(http) EXP
Raw data provided as supplementary file

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