NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM160088 Query DataSets for GSM160088
Status Public on Feb 22, 2007
Title wild type MEF(1)
Sample type RNA
 
Source name wild type MEF
Organism Mus musculus
Characteristics Subconfluent wild type primary mouse embryonic fibroblasts at passage 3.
Extracted molecule total RNA
Extraction protocol Total RNA isolation using RNeasy mini kit with on-column DNase digestion (Qiagen).
Label Biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Study the effect of RBP2 inactivation in gene expression
Analysis name: WK2006060805
Data processing Analysis of the raw gene expression profiling was performed using dChip software. Please see the following paper for details.
Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG. The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell (2007)
 
Submission date Feb 02, 2007
Last update date Aug 28, 2018
Contact name Qin Yan
E-mail(s) qin.yan@yale.edu
Phone 2037856672
Organization name Yale School of Medicine
Street address Department of Pathology, PO Box 208023
City New Haven
State/province CT
ZIP/Postal code 06614
Country USA
 
Platform ID GPL1261
Series (1)
GSE6945 The Retinoblastoma Binding Protein RBP2 is an H3K4 demethylase
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
Stat Pairs Stat Pairs
Stat Pairs Used Stat Pairs Used
VALUE Signal
ABS_CALL ABS_CALL
DETECTION P-VALUE Detection p-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 101.7 P 0.001102
AFFX-BioB-M_at 20 20 150.5 P 0.000258
AFFX-BioB-3_at 20 20 57.6 P 0.004484
AFFX-BioC-5_at 20 20 290.9 P 0.00006
AFFX-BioC-3_at 20 20 374.8 P 0.000044
AFFX-BioDn-5_at 20 20 442.3 P 0.000052
AFFX-BioDn-3_at 20 20 1841.3 P 0.00007
AFFX-CreX-5_at 20 20 3989.9 P 0.000044
AFFX-CreX-3_at 20 20 4580.6 P 0.000044
AFFX-DapX-5_at 20 20 6.5 A 0.425962
AFFX-DapX-M_at 20 20 16 A 0.195266
AFFX-DapX-3_at 20 20 9.3 A 0.672921
AFFX-LysX-5_at 20 20 1 A 0.963431
AFFX-LysX-M_at 20 20 6.9 A 0.760937
AFFX-LysX-3_at 20 20 1.1 A 0.52976
AFFX-PheX-5_at 20 20 2.9 A 0.772364
AFFX-PheX-M_at 20 20 1.7 A 0.9273
AFFX-PheX-3_at 20 20 2.8 A 0.921998
AFFX-ThrX-5_at 20 20 3 A 0.921998
AFFX-ThrX-M_at 20 20 1.3 A 0.937087

Total number of rows: 45101

Table truncated, full table size 1448 Kbytes.




Supplementary file Size Download File type/resource
GSM160088.CEL.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap