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Sample GSM16010 Query DataSets for GSM16010
Status Public on Feb 16, 2004
Title Untreated B cells 360min vs CD40 treated B cells 360min (set 6)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated B cells cultured for 360min was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from B cells treated with CD40 for 360min was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with CD40 for 360min.
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE1014 B cell response to CD40, Anti-IgM, ELC, IL4, terbutaline and lipopolysaccharide treatment
GSE1022 B cell response to CD40 and lipopolysaccharide treatment

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 46977.9 65516.9 65517 0.737327 930.886 928 41.3371 30669.1 65516.7 65517 0.669636 1076.27 1074 48.1369 -0.185192 0
2 93.6096 1077.91 1069 29.1709 904.644 904 26.6169 123.427 1109.45 1113.5 13.5777 1024.96 1023 42.1777 0.120091 0
3 22.7089 929.769 926.5 48.0161 897.632 894 27.6113 70.1734 1046.96 1053 39.7014 998.123 998 38.6325 0.489977 0
4 32.314 943.917 944.5 19.4152 896.34 897 28.2981 42.5458 971.792 966.5 32.7175 988.686 987 32.5201 0.119467 0
5 26.5732 920.038 921 37.0767 892.418 891.5 29.6386 49.0306 994.038 986 32.0543 985 983.5 32.5322 0.266024 0
6 260.459 1453.96 1476 106.509 912.981 913.5 25.7686 235.819 1192.96 1191 64.1222 977.481 973 33.6852 -0.0431592 0
7 32.0178 958.214 947 68.7262 908.981 911 28.9884 57.0362 991.536 984 37.012 980.623 978 33.5231 0.250759 0
8 80.8204 907.24 905 28.6826 902.223 904 26.9871 12.9243 974.16 976 27.1319 980.325 981 34.1049 0 0
9 2341.61 4819.84 4810 170.2 917.087 915 34.2148 2223.2 4732.68 4747 244.5 982.832 984 35.2858 -0.0225367 -0.074865296896048081
10 765.232 2285.65 2200 377.894 920.014 918 30.3604 1801.61 3817.52 3625 865.297 996.646 996 35.695 0.371867 1.2353154348614788
11 91.5007 920.083 921 22.3858 921.663 919 30.5534 13.6599 1008.96 1005.5 29.2002 1008.75 1008 37.1627 0 0
12 83.3113 898.538 893.5 21.5893 907.955 909 27.8188 13.137 982.731 983.5 40.8789 987.052 986 33.455 0 0
13 73.6466 879.423 882 22.8529 882.675 882 24.5916 13.1807 942.769 943 34.3643 946.712 946 35.9555 0 0
14 793.266 2344.43 2369 203.167 871.038 872.5 26.2013 832.985 2110.21 2153 190.679 923.316 924.5 28.1421 0.021218 0.070484670317320197
15 2498.14 5002.96 3132 3447.75 870.886 868 26.7997 2458.12 5111.4 3233 3585.35 920.664 922 30.2596 -0.00701324 0
16 1252.51 3109.61 3293.5 1124.17 868.472 868 26.3223 995.541 2415.79 2627.5 763.238 918.012 920 27.2954 -0.0997228 0
17 56.6059 966.95 958 40.2211 870.105 869 27.0548 102.396 991.4 993 37.1362 920.158 919 23.3899 0.257422 0.85513737404209444
18 492.683 1877.89 1877 118.388 884.549 885.5 28.8784 311.395 1269.56 1260 69.013 937.043 938 26.1499 -0.199255 -0.66191078254678137
19 6518.16 10916.6 11376 1455.47 886.256 888 25.4875 4766.52 9794.29 10331.5 1353.62 942.044 943 29.3029 -0.135924 -0.45152975436946985
20 3338.9 6348.13 6289 698.133 889.038 886.5 28.8596 2346.49 4993.04 4925 523.725 952.075 954 31.922 -0.153185 -0.50886955521532062

Total number of rows: 16273

Table truncated, full table size 2048 Kbytes.




Supplementary data files not provided

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