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Sample GSM160104 Query DataSets for GSM160104
Status Public on Feb 22, 2007
Title wild type MEF(2)
Sample type RNA
 
Source name wild type MEF
Organism Mus musculus
Characteristics Subconfluent wild type primary mouse embryonic fibroblasts at passage 3.
Extracted molecule total RNA
Extraction protocol Total RNA isolation using RNeasy mini kit with on-column DNase digestion (Qiagen).
Label Biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Study the effect of RBP2 inactivation in gene expression
Analysis name: WK2006060807
Data processing Analysis of the raw gene expression profiling was performed using dChip software. Please see the following paper for details.
Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG. The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell (2007)
 
Submission date Feb 02, 2007
Last update date Aug 28, 2018
Contact name Qin Yan
E-mail(s) qin.yan@yale.edu
Phone 2037856672
Organization name Yale School of Medicine
Street address Department of Pathology, PO Box 208023
City New Haven
State/province CT
ZIP/Postal code 06614
Country USA
 
Platform ID GPL1261
Series (1)
GSE6945 The Retinoblastoma Binding Protein RBP2 is an H3K4 demethylase
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
Stat Pairs Stat Pairs
Stat Pairs Used Stat Pairs Used
VALUE Signal
ABS_CALL ABS_CALL
DETECTION P-VALUE Detection p-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 170.4 P 0.000972
AFFX-BioB-M_at 20 20 303.6 P 0.000147
AFFX-BioB-3_at 20 20 139 P 0.000127
AFFX-BioC-5_at 20 20 536.3 P 0.000052
AFFX-BioC-3_at 20 20 651.2 P 0.000052
AFFX-BioDn-5_at 20 20 921.5 P 0.000052
AFFX-BioDn-3_at 20 20 2798.7 P 0.000081
AFFX-CreX-5_at 20 20 6808.3 P 0.000052
AFFX-CreX-3_at 20 20 7437.3 P 0.000044
AFFX-DapX-5_at 20 20 15.8 A 0.116113
AFFX-DapX-M_at 20 20 9.4 A 0.250796
AFFX-DapX-3_at 20 20 3.1 A 0.724854
AFFX-LysX-5_at 20 20 1 A 0.783496
AFFX-LysX-M_at 20 20 1.7 A 0.910522
AFFX-LysX-3_at 20 20 14.3 P 0.033677
AFFX-PheX-5_at 20 20 1 A 0.932322
AFFX-PheX-M_at 20 20 1 A 0.949771
AFFX-PheX-3_at 20 20 5.6 A 0.724854
AFFX-ThrX-5_at 20 20 5.3 A 0.645547
AFFX-ThrX-M_at 20 20 1.6 A 0.760937

Total number of rows: 45101

Table truncated, full table size 1454 Kbytes.




Supplementary file Size Download File type/resource
GSM160104.CEL.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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