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Sample GSM160105 Query DataSets for GSM160105
Status Public on Feb 22, 2007
Title RBP2-/- MEF(1)
Sample type RNA
 
Source name RBP2-/- MEF
Organism Mus musculus
Characteristics Subconfluent RBP2-/- primary mouse embryonic fibroblasts at passage 3.
Extracted molecule total RNA
Extraction protocol Total RNA isolation using RNeasy mini kit with on-column DNase digestion (Qiagen).
Label Biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Study the effect of RBP2 inactivation in gene expression
Analysis name: WK2006060806
Data processing Analysis of the raw gene expression profiling was performed using dChip software. Please see the following paper for details.
Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG. The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell (2007)
 
Submission date Feb 02, 2007
Last update date Aug 28, 2018
Contact name Qin Yan
E-mail(s) qin.yan@yale.edu
Phone 2037856672
Organization name Yale School of Medicine
Street address Department of Pathology, PO Box 208023
City New Haven
State/province CT
ZIP/Postal code 06614
Country USA
 
Platform ID GPL1261
Series (1)
GSE6945 The Retinoblastoma Binding Protein RBP2 is an H3K4 demethylase
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
Stat Pairs Stat Pairs
Stat Pairs Used Stat Pairs Used
VALUE Signal
ABS_CALL ABS_CALL
DETECTION P-VALUE Detection p-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 182.2 P 0.000662
AFFX-BioB-M_at 20 20 279.1 P 0.000052
AFFX-BioB-3_at 20 20 103 P 0.000127
AFFX-BioC-5_at 20 20 523.3 P 0.000044
AFFX-BioC-3_at 20 20 558.9 P 0.000052
AFFX-BioDn-5_at 20 20 841 P 0.000052
AFFX-BioDn-3_at 20 20 2688.7 P 0.000052
AFFX-CreX-5_at 20 20 6890.7 P 0.000052
AFFX-CreX-3_at 20 20 7711.8 P 0.000044
AFFX-DapX-5_at 20 20 9.2 A 0.313723
AFFX-DapX-M_at 20 20 11.2 A 0.262827
AFFX-DapX-3_at 20 20 5.5 A 0.916408
AFFX-LysX-5_at 20 20 5.3 A 0.631562
AFFX-LysX-M_at 20 20 5.3 A 0.712257
AFFX-LysX-3_at 20 20 7 A 0.139482
AFFX-PheX-5_at 20 20 4.5 A 0.645547
AFFX-PheX-M_at 20 20 1.2 A 0.860518
AFFX-PheX-3_at 20 20 2.9 A 0.772364
AFFX-ThrX-5_at 20 20 1 A 0.949771
AFFX-ThrX-M_at 20 20 1.4 A 0.712257

Total number of rows: 45101

Table truncated, full table size 1449 Kbytes.




Supplementary file Size Download File type/resource
GSM160105.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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