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Sample GSM160106 Query DataSets for GSM160106
Status Public on Feb 22, 2007
Title RBP2-/- MEF(2)
Sample type RNA
 
Source name RBP2-/- MEF
Organism Mus musculus
Characteristics Subconfluent RBP2-/- primary mouse embryonic fibroblasts at passage 3.
Extracted molecule total RNA
Extraction protocol Total RNA isolation using RNeasy mini kit with on-column DNase digestion (Qiagen).
Label Biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Study the effect of RBP2 inactivation in gene expression
Analysis name: WK2006060808
Data processing Analysis of the raw gene expression profiling was performed using dChip software. Please see the following paper for details.
Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG. The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell (2007)
 
Submission date Feb 02, 2007
Last update date Aug 28, 2018
Contact name Qin Yan
E-mail(s) qin.yan@yale.edu
Phone 2037856672
Organization name Yale School of Medicine
Street address Department of Pathology, PO Box 208023
City New Haven
State/province CT
ZIP/Postal code 06614
Country USA
 
Platform ID GPL1261
Series (1)
GSE6945 The Retinoblastoma Binding Protein RBP2 is an H3K4 demethylase
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
Stat Pairs Stat Pairs
Stat Pairs Used Stat Pairs Used
VALUE Signal
ABS_CALL ABS_CALL
DETECTION P-VALUE Detection p-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 237.5 P 0.000754
AFFX-BioB-M_at 20 20 393.4 P 0.000147
AFFX-BioB-3_at 20 20 169.7 P 0.000147
AFFX-BioC-5_at 20 20 791.3 P 0.00007
AFFX-BioC-3_at 20 20 873.1 P 0.000044
AFFX-BioDn-5_at 20 20 1369.7 P 0.000052
AFFX-BioDn-3_at 20 20 3105.5 P 0.000081
AFFX-CreX-5_at 20 20 8193.3 P 0.000052
AFFX-CreX-3_at 20 20 8912 P 0.000044
AFFX-DapX-5_at 20 20 1.2 A 0.724854
AFFX-DapX-M_at 20 20 9.9 A 0.425962
AFFX-DapX-3_at 20 20 16.5 A 0.659339
AFFX-LysX-5_at 20 20 2.4 A 0.470241
AFFX-LysX-M_at 20 20 8.5 A 0.737173
AFFX-LysX-3_at 20 20 3.5 A 0.51489
AFFX-PheX-5_at 20 20 1.3 A 0.852061
AFFX-PheX-M_at 20 20 1.5 A 0.904333
AFFX-PheX-3_at 20 20 17.8 A 0.574038
AFFX-ThrX-5_at 20 20 8.6 A 0.724854
AFFX-ThrX-M_at 20 20 2.2 A 0.659339

Total number of rows: 45101

Table truncated, full table size 1461 Kbytes.




Supplementary file Size Download File type/resource
GSM160106.CEL.gz 3.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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