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Sample GSM16023 Query DataSets for GSM16023
Status Public on Feb 16, 2004
Title Untreated B cells 180min vs Anti-IgM treated B cells 180min (set 1)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated B cells cultured for 180min was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from B cells treated with Anti-IgM for 180min was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was extracted from untreated B cells cultured for 180min.
Test total RNA was extracted from B cells treated with Anti-IgM for 180min.
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE1014 B cell response to CD40, Anti-IgM, ELC, IL4, terbutaline and lipopolysaccharide treatment
GSE1019 B cell response to Anti-IgM and CD40 treatment

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 122297 27938.3 24897.5 7876.24 1212.6 1213 53.5609 5.12464 1617.25 1619.5 78.941 2091.11 2090 103.501 -2 0
2 95.5411 1231 1223.5 47.2981 1162.02 1155 51.0956 24.4957 1866.29 1864.5 131.706 1956.87 1958 108.203 -0.591101 0
3 76.7222 1228.83 1212.5 79.7821 1147.87 1149 44.3352 76.1451 1986.13 1988 82.3546 1890.95 1881 87.7 -0.00327901 0
4 210.405 1117 1111 40.9399 1163.75 1165 46.0258 4.95 1679.32 1676.5 79.4229 1961.06 1955 99.9735 0 0
5 39.6037 1169.84 1170 46.1218 1158.48 1158 42.4876 46.0575 1962.84 1952 58.8619 1917.99 1912 70.6156 0.0655641 0
6 249.757 1495.86 1522.5 77.0919 1174.74 1177 47.2473 27.9658 1829.46 1826 89.19 1902.46 1893 88.7503 -0.950891 0
7 70.7169 1230.23 1228 66.3399 1161.05 1163.5 41.1417 69.9772 2035.73 2021.5 104.334 1952.26 1961 93.7042 -0.00456674 0
8 211.582 1116.08 1108 43.693 1173.54 1168 46.2833 4.85206 1880.92 1881 138.226 1966.94 1978 97.9955 0 0
9 1140.68 3304.12 3304 110.07 1164.09 1163 48.4205 717.644 3433.56 3404 174.903 1909.14 1909 93.0494 -0.201255 -0.66855463873655596
10 908.084 2821.63 2690 520.549 1127.97 1127 40.2651 1741.07 5770.78 5542 1283.91 1855.1 1853 68.6312 0.282691 0.93907917507180338
11 42.1946 1149.7 1152 39.2561 1144.16 1141 41.8227 34.7145 1919.13 1923 58.8405 1909.22 1903 94.3225 0 0
12 47.1847 1132.09 1122.5 31.192 1140.3 1142 42.4266 34.9951 1904.23 1918 80.5451 1877.1 1874.5 91.6295 0 0
13 69.793 1092.55 1089.5 38.0097 1115.81 1110.5 40.7644 17.1095 1811.32 1800 56.1608 1826.72 1830.5 95.2266 0 0
14 711.034 2435.93 2397 278.913 1111.26 1109.5 42.6028 897.672 3736.32 3802 464.512 1794.26 1795 78.0787 0.101227 0.33626881526116292
15 1436.02 3795.59 2715 2761.1 1100.71 1097 38.7812 1021.27 3985.93 2800 2484.97 1749.94 1746 77.1513 -0.14802 0
16 2216.54 5227.04 5802.5 1819.94 1101.68 1101 42.7507 2001.49 6330.08 6899.5 2070.66 1754.22 1757 79.5734 -0.0443209 0
17 118.332 1275 1263 82.8185 1107.41 1106 40.3024 112.037 1925.38 1921 75.9562 1768.55 1761.5 80.0705 -0.023738 -0.078855929116436227
18 193.877 1430.63 1455 95.7586 1107.85 1107 34.3859 138.929 1953.96 1942 81.8378 1758.16 1749 80.878 -0.144735 -0.48079926281352253
19 4910.28 9956.57 10076 1527.96 1093.31 1092 41.3433 3733.46 10722.4 10932.5 1679.09 1756.57 1753 77.5363 -0.118994 -0.39528951172302679
20 2196.24 5218.07 5267.5 639.141 1100.44 1098 40.9504 1154.41 4367.04 4311.5 385.897 1809 1813 90.4095 -0.279321 -0.92788427739203294

Total number of rows: 16273

Table truncated, full table size 2085 Kbytes.




Supplementary data files not provided

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