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Sample GSM16035 Query DataSets for GSM16035
Status Public on Feb 16, 2004
Title Untreated B cells 360min vs Anti-IgM treated B cells 360min (set 6)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated B cells cultured for 360min was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from B cells treated with Anti-IgM for 360min was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was extracted from untreated B cells cultured for 360min.
Test total RNA was extracted from B cells treated with Anti-IgM for 360min.
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE1014 B cell response to CD40, Anti-IgM, ELC, IL4, terbutaline and lipopolysaccharide treatment
GSE1020 B cell response to Anti-IgM and ELC treatment

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 30018 63862 65336 2528.47 1056.27 1059 34.8628 5638.05 13143.8 12934 2445.45 1249.47 1241 57.4667 -0.726253 0
2 131.188 1049.07 1045 39.5406 1043.4 1051.5 38.4356 154.63 1059.22 1059 54.1524 1205.78 1211 99.994 0.0713979 0
3 116.4 1034.46 1040 29.0457 1050.3 1053 39.8349 179.72 1140.92 1138.5 52.3939 1208.76 1216 100.724 0.188644 0
4 84.1711 988.714 987.5 28.7259 1054.03 1054 37.8563 152.229 1120.82 1108.5 64.3267 1267.86 1257.5 76.1015 0.257334 0
5 129.385 1074.68 1072 43.0108 1069.88 1067.5 45.8619 188.442 1267.43 1267.5 83.4201 1312.33 1316.5 83.8843 0.163293 0
6 272.462 1354.59 1386.5 91.6794 1121.85 1118.5 42.0703 139.868 1169.59 1171 45.2155 1383.16 1379 62.0572 -0.289587 0
7 126.489 1122.84 1128 35.4385 1123.19 1119 46.4517 176.734 1350.04 1362 79.8052 1429.21 1408 112.765 0.145268 0
8 134.706 1181.36 1187 46.643 1167.8 1166.5 50.9838 194.931 1474.8 1476 42.2916 1501.93 1488.5 122.362 0.160494 0.53314952766085244
9 1318.69 3799.14 3832.5 154.196 1162.18 1153.5 66.5534 801.718 2598.11 2508 267.329 1488.87 1475.5 123.822 -0.216123 -0.71794506565134153
10 758.806 2535.14 2545.5 309.674 1092.88 1088 39.5789 1655.07 4298.82 4370 654.557 1341.08 1339 65.7359 0.338686 1.125090538745021
11 122.81 1127.68 1122 34.3205 1133.28 1128.5 52.8639 185.172 1352.16 1349 60.3702 1405.31 1404.5 88.2674 0.178343 0.59244262222649691
12 154.856 1266.31 1264.5 31.2612 1214.73 1210 57.5617 247.452 1674.62 1683.5 59.0011 1563.31 1568.5 76.9968 0.203564 0.67622497070765109
13 116.643 1183.67 1176 45.5399 1198.45 1202 48.0404 194.048 1520.29 1513.5 46.2286 1545.29 1547 68.1866 0.221049 0.73430888344675649
14 530.597 2087.31 2193 565.909 1192.48 1192 43.6313 523.191 2085.62 2067.5 524.949 1525.84 1524 65.5306 -0.00610406 0
15 1582.18 4407.93 4320 2267.49 1197.65 1201 44.4605 1470.01 4077.85 4077 1922.12 1521.75 1525 63.4272 -0.0319362 0
16 728.161 2531.36 2692 480.889 1196.45 1200 44.164 697.276 2449.24 2589 347.277 1530.26 1527 57.1818 -0.018823 -0.062528652530064802
17 239.422 1388.85 1297 186.154 1179.2 1179 47.5672 244.051 1547.81 1553 95.3754 1498.03 1500 61.2658 0.00831746 0.027630004052101951
18 375.543 1709.63 1729 80.0731 1171.88 1171 40.4637 352.106 1683.04 1659 90.2008 1469.15 1467 63.0664 -0.0279864 -0.09296880843475569
19 3264.32 7851.23 7790 905.537 1171.21 1163 42.8115 2468.68 6304.27 6433 705.136 1467.82 1466 59.3084 -0.121328 -0.40304289189649389
20 1950.56 5178.07 4857.5 665.278 1184.75 1184 46.6378 1344.36 3780.46 3604.5 422.827 1491.67 1494 64.5804 -0.161645 -0.53697306689806779

Total number of rows: 16273

Table truncated, full table size 2128 Kbytes.




Supplementary data files not provided

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