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Sample GSM16041 Query DataSets for GSM16041
Status Public on Feb 16, 2004
Title Untreated B cells 60min vs Anti-IgM treated B cells 60min (set 5)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated B cells cultured for 60min was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from B cells treated with Anti-IgM for 60min was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM for 60min.
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE1014 B cell response to CD40, Anti-IgM, ELC, IL4, terbutaline and lipopolysaccharide treatment
GSE1020 B cell response to Anti-IgM and ELC treatment

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 32830.8 65516.8 65517 0.749359 1394.3 1398 39.5228 23949.8 65516.9 65517 0.711445 2023.65 2029 61.3268 -0.136979 0
2 149.796 1484.74 1474 65.9257 1385.91 1387.5 37.7412 124.796 1923.52 1916 134.348 1955.94 1972.5 87.423 -0.0792975 0
3 76.7345 1353.5 1346 57.9194 1397.68 1398.5 37.6925 120.608 1915.08 1910 97.1201 1933.22 1947 93.6804 0.196386 0
4 111.79 1410.62 1413 31.3293 1387.34 1384 35.2857 125.417 1931.85 1925 45.648 1951 1958 86.4471 0.0499532 0
5 87.9832 1361.11 1359 33.0365 1388 1386 32.1737 92.88 1875.59 1879 56.186 1975.84 1979.5 58.75 0.0235228 0
6 344.99 1991.86 1993 44.2654 1427.75 1429 38.7028 290.588 2302.48 2322 130.283 1983.27 1977 58.4769 -0.0745285 0
7 79.7942 1395.14 1373.5 64.213 1439.42 1438 45.0571 75.5188 1871.14 1867 145.374 2018.89 2019 66.1905 -0.0239165 0
8 98.6018 1430.04 1423.5 41.936 1431.25 1429 34.6624 133.079 2031.86 2038.5 46.7037 2025.6 2030 73.714 0.130224 0.43259476422861204
9 3594.9 8840 8891 427.349 1388.89 1391.5 40.1434 4532.14 12731.7 12814 495.497 1960.23 1966 62.626 0.100616 0.3342391171951869
10 578.026 2454.95 2442 136.233 1395.29 1393 35.6886 1508.1 5277.8 5226 622.261 1977.1 1974 57.6347 0.416481 1.3835199348867837
11 111.774 1460.07 1463 31.5277 1434.83 1433.5 36.8619 137.923 2058.41 2072 48.9256 2044.66 2042 62.6277 0.0912952 0.30327608980836063
12 101.858 1451.39 1458 33.9218 1446.87 1444 35.2624 129.071 2045.5 2046.5 51.2983 2051.26 2054 60.9457 0.102837 0.3416171194939317
13 106.907 1444.81 1438 31.3535 1425.75 1428 48.7178 162.366 2087.96 2070 69.1708 2008.78 2007 84.0488 0.181491 0.60290005186920226
14 592.662 2480.54 2083 877.533 1396.79 1390 43.7696 613.82 3046.29 2714 939.528 1925.69 1924 61.0618 0.0152341 0
15 2474.07 6531.73 6841.5 3571.55 1410.22 1407 43.9558 2774.18 8358.65 8470 4720.67 1978.32 1977 62.351 0.0497236 0
16 1445.43 4375.5 4435.5 831.695 1439.1 1437 36.7174 1510.97 5314.92 5241 846.606 2037.26 2036 54.6847 0.0192595 0.063978674143483225
17 231.078 1750.92 1558 340.301 1432.39 1431 36.7427 343.981 2488.08 2207 544.637 2035.44 2031 55.7962 0.172777 0
18 511.304 2350.13 2351.5 142.07 1439.01 1436 35.3295 619.224 3162.71 3188.5 154.918 2028.86 2026 57.7118 0.0831687 0.27628044114525852
19 6507.49 14706.7 15138 1877.92 1444.15 1441 36.0281 9823.53 26517.6 26272 3315.27 2054.57 2052 52.2962 0.178854 0.59414012748298428
20 3645.44 9049.52 9043 759.678 1440.29 1439 35.0452 2587.56 7967.48 7861 492.581 2026.74 2025 61.0939 -0.148859 -0.49449889427683791

Total number of rows: 16273

Table truncated, full table size 2139 Kbytes.




Supplementary data files not provided

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