|
Status |
Public on Feb 08, 2007 |
Title |
50U |
Sample type |
RNA |
|
|
Source name |
ureter
|
Organism |
Mus musculus |
Characteristics |
gene reported: SMGA/EGFP transgenic / PMID: 14713859 strain: FVB/N sex: male developmental stage: postnatal day 1 theiler stage: 27 somite count: developmental landmark:
|
Treatment protocol |
pool size: Pooled sample: no Dissection Method: whole ureters dissected away from kidney and bladder. Ureters were dissected away from the kidney & bladder and snap frozen in liquid nitrogen. Samples were briefly stored at -80 °C until total RNA was isolated.
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen: RNeasy
|
Label |
Biotin
|
Label protocol |
Biotin-X-X-NHS (EPICENTRE Biotechnologies)
|
|
|
Hybridization protocol |
Affymetrix standard protocol Amount labeled target hybridization to array: 10 ug
|
Scan protocol |
Affymetrix standard protocol
|
Description |
>> Amplification protocol << Target Amplified manufacturer/kit: TargetAmp™ 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies) Target Amplified protocol: Potter protocols Rounds of amplification: 2 URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:7393
|
Data processing |
Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs GCOS Tgt value: 1500
|
|
|
Submission date |
Feb 06, 2007 |
Last update date |
Aug 28, 2018 |
Contact name |
GUDMAP Developers |
E-mail(s) |
gudmap-db@gudmap.org
|
Phone |
+44 131 651 8500
|
Organization name |
IGMM MRC Human Genetics Unit
|
Lab |
GUDMAP Database Group
|
Street address |
Crewe Road
|
City |
Edinburgh |
ZIP/Postal code |
EH4 2XU |
Country |
United Kingdom |
|
|
Platform ID |
GPL1261 |
Series (1) |
GSE6963 |
Gene expression profiles of P1 ureter isolated from SMGA (Actg2) transgenic mice. (GUDMAP Series ID: 14) |
|
Relations |
Reanalyzed by |
GSE119085 |