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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 14, 2007 |
| Title |
SKNMC_shEF1_rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Ewing SK-N-MC cell line
|
| Organism |
Homo sapiens |
| Characteristics |
Ewing cell line
|
| Growth protocol |
Treated with shRNA lentivirus directed against EWS/FLI-1 for 3 days
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNAs were isolated using the Trizol Reagent
|
| Label |
biotin
|
| Label protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| |
|
| Hybridization protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| Scan protocol |
According to Affymetrix Gene-Chip expression analysis technical manual, Affymetrix, Santa Clara, Calif.
|
| Description |
Ewing SK-N-MC cell line treated with shRNA lentivirus directed against EWS/FLI-1 for 3 days
|
| Data processing |
MAS5
|
| |
|
| Submission date |
Feb 10, 2007 |
| Last update date |
Sep 01, 2016 |
| Contact name |
Olivier Delattre |
| E-mail(s) |
olivier.delattre@curie.fr
|
| Phone |
33142346681
|
| Fax |
33142646630
|
| Organization name |
Institut Curie
|
| Department |
Genetics
|
| Lab |
U830
|
| Street address |
26 rue d'Ulm
|
| City |
Paris |
| ZIP/Postal code |
75248 cedex 05 |
| Country |
France |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE7007 |
Ewing samples and EWS-FLI-1 inhibited Ewing cell lines |
|
| Relations |
| Reanalyzed by |
GSE86363 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
VALUE |
| ABS_CALL |
ABS_CALL |
| DETECTION-P-VALUE |
DETECTION-P-VALUE |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION-P-VALUE |
| AFFX-BioB-5_at |
37.1425 |
P |
0.00618711 |
| AFFX-BioB-M_at |
59.8016 |
P |
0.000753643 |
| AFFX-BioB-3_at |
45.4086 |
P |
0.00141043 |
| AFFX-BioC-5_at |
112.268 |
P |
0.00010954 |
| AFFX-BioC-3_at |
104.874 |
P |
5.16732e-05 |
| AFFX-BioDn-5_at |
293.653 |
P |
7.00668e-05 |
| AFFX-BioDn-3_at |
820.447 |
P |
0.000195116 |
| AFFX-CreX-5_at |
1350.31 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
1926.41 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
5.83077 |
A |
0.216524 |
| AFFX-DapX-M_at |
7.01457 |
A |
0.300606 |
| AFFX-DapX-3_at |
1.12488 |
A |
0.852061 |
| AFFX-LysX-5_at |
0.780887 |
A |
0.772364 |
| AFFX-LysX-M_at |
4.33667 |
A |
0.544587 |
| AFFX-LysX-3_at |
1.60795 |
A |
0.617401 |
| AFFX-PheX-5_at |
0.59858 |
A |
0.897835 |
| AFFX-PheX-M_at |
1.30789 |
A |
0.794268 |
| AFFX-PheX-3_at |
9.84696 |
A |
0.300606 |
| AFFX-ThrX-5_at |
1.49372 |
A |
0.883887 |
| AFFX-ThrX-M_at |
1.38803 |
A |
0.737173 |
Total number of rows: 22283
Table truncated, full table size 673 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM161545.CEL.gz |
3.5 Mb |
(ftp)(http) |
CEL |
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