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Status |
Public on Mar 10, 2015 |
Title |
KURC1 sunitinib-resistance#2 |
Sample type |
RNA |
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Source name |
renal cancer xenograft tumor of KURC1 treated with sunitinib and resected at sunitinib-resistant status
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Organism |
Homo sapiens |
Characteristics |
tissue: xenograft tumor of renal cell carcinoma treatment: 40 mg/day of sunitinib xenograft mode: KURC1
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Treatment protocol |
We administered 40 mg/day of sunitinib into KURC1, 2, and 3 orally, and evaluated the effect of sunitinib treatment.
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Growth protocol |
human renal cancer tissues were transplanted into severe combined immunodefficiency mice and passaged stably. We named them as KURC (Kyoto University Renal Cancer) 1, 2, and 3.
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated and purified using the Rneasy Mini Kit (Qiagen) according to the manufacturer's instructions.
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Label |
Biotin Allonamide Triphosphate
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Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol of GeneChip® WT Terminal Labeling Kit. (GeneChip® WT Terminal Labeling and Hybridization User Manual 2009, Affymetrix).
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Hybridization protocol |
Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
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Scan protocol |
GeneChips were scanned using the GeneChip® Scanner 3000 7G(Affymetrix).
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Data processing |
The data were analyzed with GeneChip® Command Console® Software(AGCC) and global scaling as normalization method.
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Submission date |
Feb 26, 2015 |
Last update date |
Mar 10, 2015 |
Contact name |
Shibasaki Noboru |
Organization name |
Kyoto University
|
Department |
Urology
|
Street address |
54 Shogoinkawahara-cho Sakyo-ku
|
City |
Kyoto |
ZIP/Postal code |
606-8561 |
Country |
Japan |
|
|
Platform ID |
GPL6244 |
Series (1) |
GSE66346 |
Expression data from renal cancer xenograft tumor treated with sunitinib or vehicle |
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