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Sample GSM1675049 Query DataSets for GSM1675049
Status Public on May 06, 2015
Title becic-00235: PN100: HG_U95B
Sample type RNA
 
Source name P100_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 21.7439 A 0.910522
AFFX-MurIL10_at 84.6114 A 0.58862
AFFX-MurIL4_at 12.8953 A 0.58862
AFFX-MurFAS_at 14.3907 A 0.659339
AFFX-BioB-5_at 1673.81 P 0.000662269
AFFX-BioB-M_at 3379.52 P 4.42873e-05
AFFX-BioB-3_at 1232.79 P 7.00668e-05
AFFX-BioC-5_at 4319.78 P 7.00668e-05
AFFX-BioC-3_at 4198.75 P 4.42873e-05
AFFX-BioDn-5_at 4448.99 P 4.42873e-05
AFFX-BioDn-3_at 20835.9 P 5.16732e-05
AFFX-CreX-5_at 43130.5 P 4.42873e-05
AFFX-CreX-3_at 57905.5 P 4.42873e-05
AFFX-BioB-5_st 75.4931 A 0.41138
AFFX-BioB-M_st 84.3476 A 0.60308
AFFX-BioB-3_st 42.9214 A 0.737173
AFFX-BioC-5_st 20.548 A 0.852061
AFFX-BioC-3_st 37.3426 A 0.559359
AFFX-BioDn-5_st 93.6872 A 0.39692
AFFX-BioDn-3_st 310.196 M 0.0429483

Total number of rows: 12620

Table truncated, full table size 355 Kbytes.




Supplementary file Size Download File type/resource
GSM1675049_PN100_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675049_PN100_u95bmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675049_PN100_u95bmas5.CHP.txt.gz 127.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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